Difference between revisions of "TSS:Hg 158963.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001145536:-76 AK128415:-76 AK309386:-157 ENST00000381365.3:-193 uc002fzl.4:-193 ENST00000521575.1:-311 uc010ckr.4:-311 AK308530:-311 |chr=chr17 |cpg_...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LF326561:66 MA562138:66 LF209173:-68 MA444750:-68 AK128415:-76 AK309386:-157 ENST00000381365.4:-193 NM_001145536:-193 ENST00000521575.1:-311 AK308530:-311 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance= | + | |distance=66 |
| − | |distance_to_tss= | + | |distance_to_tss=199 |
|end=4899742 | |end=4899742 | ||
| + | |end_of_center_position=4899736 | ||
|entrez_id=100130311 | |entrez_id=100130311 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| Line 11: | Line 12: | ||
|gene_description=chromosome 17 open reading frame 107 | |gene_description=chromosome 17 open reading frame 107 | ||
|gene_id=100130311 | |gene_id=100130311 | ||
| − | |gene_name= | + | |gene_name=C17orf107 |
|gene_source=HGNC:37238 | |gene_source=HGNC:37238 | ||
|gene_symbol=C17orf107 | |gene_symbol=C17orf107 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001145536 | |nearest_refseq=NM_001145536 | ||
|nearest_unigene=Hs.579243 | |nearest_unigene=Hs.579243 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=4899728 | |start=4899728 | ||
| + | |start_of_center_position=4899735 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF326561 MA562138 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_158963.1 | |tss_id=hg_158963.1 | ||
Latest revision as of 14:55, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4899735 |
|---|---|
| End of the center position in the TSS region: | 4899736 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF326561 MA562138 |
|---|---|
| Distance: | 66 |
| Num_trans: | 10 |
| All_trans: | LF326561:66 MA562138:66 LF209173:-68 MA444750:-68 AK128415:-76 AK309386:-157 ENST00000381365.4:-193 NM_001145536:-193 ENST00000521575.1:-311 AK308530:-311 |
TATA-Box annotation
| Distance to TSS: | 199 |
|---|---|
| Nearest PromoterID: | NM_001145536 |
| Entrez ID: | 100130311 |
| Nearest Unigene: | Hs.579243 |
| Nearest Refseq: | NM_001145536 |
| Nearest Ensembl: | ENSG00000205710 |
| Gene Name: | C17orf107 |
| Gene Alias: | - |
| Gene Description: | chromosome 17 open reading frame 107 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
