Difference between revisions of "TSS:Mm 123917.1"
From referenceTSS
| Line 5: | Line 5: | ||
|D14Sel6= | |D14Sel6= | ||
|E25BMM= | |E25BMM= | ||
| − | |all_trans=AK218926:-1 AK205709:-1 AK217202:-1 AK209176:-1 AK205546:-1 AK215843:-1 AK192783:-1 AK002796:-102 AK010248:469 | + | |all_trans=LF241974:0 MA477551:0 AK218926:-1 AK205709:-1 AK217202:-1 AK209176:-1 AK205546:-1 AK215843:-1 AK192783:-1 LF241975:-47 MA477552:-47 AK002796:-102 AK010248:469 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=22275 |
|end=73363041 | |end=73363041 | ||
|end_of_center_position=73363014 | |end_of_center_position=73363014 | ||
|entrez_id=16432 | |entrez_id=16432 | ||
|gc_percent=0.378109 | |gc_percent=0.378109 | ||
| − | |gene_alias=AI256040 | + | |gene_alias=AI256040{{!}}Bri{{!}}Bri2{{!}}Bricd2b{{!}}D14Sel6{{!}}E25BMM{{!}}imBRI2 |
|gene_description=integral membrane protein 2B | |gene_description=integral membrane protein 2B | ||
|gene_id=16432 | |gene_id=16432 | ||
| − | |gene_name= | + | |gene_name=Itm2b |
|gene_source=MGI:1309517 | |gene_source=MGI:1309517 | ||
|gene_symbol=Itm2b | |gene_symbol=Itm2b | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_008410 | |nearest_refseq=NM_008410 | ||
|nearest_unigene=Mm.4266 | |nearest_unigene=Mm.4266 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=73362986 | |start=73362986 | ||
|start_of_center_position=73363013 | |start_of_center_position=73363013 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF241974 MA477551 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_123917.1 | |tss_id=mm_123917.1 | ||
Latest revision as of 01:25, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73363013 |
|---|---|
| End of the center position in the TSS region: | 73363014 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF241974 MA477551 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | LF241974:0 MA477551:0 AK218926:-1 AK205709:-1 AK217202:-1 AK209176:-1 AK205546:-1 AK215843:-1 AK192783:-1 LF241975:-47 MA477552:-47 AK002796:-102 AK010248:469 |
TATA-Box annotation
| Distance to TSS: | 22275 |
|---|---|
| Nearest PromoterID: | NM_008410 |
| Entrez ID: | 16432 |
| Nearest Unigene: | Mm.4266 |
| Nearest Refseq: | NM_008410 |
| Nearest Ensembl: | ENSMUSG00000022108 |
| Gene Name: | Itm2b |
| Gene Alias: | AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 |
| Gene Description: | integral membrane protein 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
