Difference between revisions of "TSS:Hg 235229.1"
From referenceTSS
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|U5DL= | |U5DL= | ||
|U5DS= | |U5DS= | ||
| − | |all_trans= | + | |all_trans=HGNC:19842 |
| − | |chr= | + | |chr=chr14 |
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=133 |
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
| − | |end= | + | |end=55580263 |
|end_of_center_position=55580256 | |end_of_center_position=55580256 | ||
|entrez_id=26830 | |entrez_id=26830 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=RNU5D | + | |gene_alias=RNU5D{{!}}U5DL{{!}}U5DS |
| − | |gene_description= | + | |gene_description=RNA, U5D small nuclear 1 |
| − | |gene_id= | + | |gene_id=100129075 |
| − | |gene_name= | + | |gene_name=KTN1 antisense RNA 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:19842 |
| − | |gene_symbol= | + | |gene_symbol=KTN1-AS1 |
| − | |gene_synonyms= | + | |gene_synonyms=MYCLo-3 |
|gene_type=snRNA | |gene_type=snRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:19842 |
|nearest_ensembl=ENSG00000200169 | |nearest_ensembl=ENSG00000200169 | ||
|nearest_promoter_id=NR_002755 | |nearest_promoter_id=NR_002755 | ||
|nearest_refseq=NR_002755 | |nearest_refseq=NR_002755 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=100129075 |
|species=human | |species=human | ||
| − | |start= | + | |start=55580247 |
|start_of_center_position=55580255 | |start_of_center_position=55580255 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000554558.6 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_235229.1 | |tss_id=hg_235229.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:10, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 55580255 |
|---|---|
| End of the center position in the TSS region: | 55580256 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000554558.6 |
|---|---|
| Distance: | 133 |
| Num_trans: | 100129075 |
| All_trans: | HGNC:19842 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_002755 |
| Entrez ID: | 26830 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_002755 |
| Nearest Ensembl: | ENSG00000200169 |
| Gene Name: | KTN1 antisense RNA 1 |
| Gene Alias: | RNU5D|U5DL|U5DS |
| Gene Description: | RNA, U5D small nuclear 1 |
| Gene Type: | snRNA |
| CpG%: | 0.035 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
