Difference between revisions of "TSS:Hg 100659.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF354369:-15 MA589946:-15 DQ012170:-35 ENST00000436428.3:-36 NM_001044264:-36 BC105274:-37 BC071800:-37 LF206438:-140 MA442015:-140 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance_to_tss= | + | |distance=-15 |
| + | |distance_to_tss=43 | ||
| + | |end=35754240 | ||
| + | |end_of_center_position=35754233 | ||
|entrez_id=692094 | |entrez_id=692094 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
|gene_alias=PSMP | |gene_alias=PSMP | ||
| − | |gene_description= | + | |gene_description=microseminoprotein, prostate associated |
| + | |gene_id=692094 | ||
|gene_name=MSMP | |gene_name=MSMP | ||
| + | |gene_source=HGNC:29663 | ||
| + | |gene_symbol=MSMP | ||
| + | |gene_synonyms=PC-3 PSMP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29663 | ||
|nearest_ensembl=ENSG00000215183 | |nearest_ensembl=ENSG00000215183 | ||
|nearest_promoter_id=NM_001044264 | |nearest_promoter_id=NM_001044264 | ||
|nearest_refseq=NM_001044264 | |nearest_refseq=NM_001044264 | ||
|nearest_unigene=Hs.571601 | |nearest_unigene=Hs.571601 | ||
| − | |tata_box= | + | |num_trans=9 |
| + | |species=human | ||
| + | |start=35754225 | ||
| + | |start_of_center_position=35754232 | ||
| + | |strand=- | ||
| + | |tata_box=-75(CACTTTATAAAC,-,0.00) | ||
| + | |transcript_name=LF354369 MA589946 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100659.1 | |tss_id=hg_100659.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q1L6U9 | ||
}} | }} | ||
Latest revision as of 15:25, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 35754232 |
|---|---|
| End of the center position in the TSS region: | 35754233 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF354369 MA589946 |
|---|---|
| Distance: | -15 |
| Num_trans: | 9 |
| All_trans: | LF354369:-15 MA589946:-15 DQ012170:-35 ENST00000436428.3:-36 NM_001044264:-36 BC105274:-37 BC071800:-37 LF206438:-140 MA442015:-140 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NM_001044264 |
| Entrez ID: | 692094 |
| Nearest Unigene: | Hs.571601 |
| Nearest Refseq: | NM_001044264 |
| Nearest Ensembl: | ENSG00000215183 |
| Gene Name: | MSMP |
| Gene Alias: | PSMP |
| Gene Description: | microseminoprotein, prostate associated |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -75(CACTTTATAAAC,-,0.00) |
