Difference between revisions of "TSS:Mm 138965.1"
From referenceTSS
| Line 8: | Line 8: | ||
|Pebp2a1= | |Pebp2a1= | ||
|Pebpa2a= | |Pebpa2a= | ||
| − | |all_trans=ENSMUST00000097320.2:62 AK159059:62 | + | |all_trans=LF201114:61 MA436691:61 ENSMUST00000097320.2:62 AK159059:62 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=61 |
|distance_to_tss=401 | |distance_to_tss=401 | ||
|end=44735783 | |end=44735783 | ||
| Line 17: | Line 17: | ||
|entrez_id=12393 | |entrez_id=12393 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=AML3 | + | |gene_alias=AML3{{!}}Cbf{{!}}Cbfa-1{{!}}Cbfa1{{!}}LS3{{!}}Osf2{{!}}PEBP2aA{{!}}Pebp2a1{{!}}Pebpa2a |
|gene_description=runt related transcription factor 2 | |gene_description=runt related transcription factor 2 | ||
|gene_id=100038355 | |gene_id=100038355 | ||
| − | |gene_name= | + | |gene_name=Runx2 |
|gene_source=MGI:3641707 | |gene_source=MGI:3641707 | ||
|gene_symbol=Runx2os1 | |gene_symbol=Runx2os1 | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_009820 | |nearest_refseq=NM_009820 | ||
|nearest_unigene=Mm.391013 | |nearest_unigene=Mm.391013 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=44735767 | |start=44735767 | ||
|start_of_center_position=44735775 | |start_of_center_position=44735775 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF201114 MA436691 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_138965.1 | |tss_id=mm_138965.1 | ||
Latest revision as of 07:20, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 44735775 |
|---|---|
| End of the center position in the TSS region: | 44735776 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF201114 MA436691 |
|---|---|
| Distance: | 61 |
| Num_trans: | 4 |
| All_trans: | LF201114:61 MA436691:61 ENSMUST00000097320.2:62 AK159059:62 |
TATA-Box annotation
| Distance to TSS: | 401 |
|---|---|
| Nearest PromoterID: | NR_073425 |
| Entrez ID: | 12393 |
| Nearest Unigene: | Mm.391013 |
| Nearest Refseq: | NM_009820 |
| Nearest Ensembl: | ENSMUSG00000039153 |
| Gene Name: | Runx2 |
| Gene Alias: | AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a |
| Gene Description: | runt related transcription factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
