Difference between revisions of "TSS:Hg 241138.1"
From referenceTSS
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|SR-BII= | |SR-BII= | ||
|all_trans=ENST00000510197.5:461 NM_001242936:461 uc003hjv.4:461 AK124936:461 | |all_trans=ENST00000510197.5:461 NM_001242936:461 uc003hjv.4:461 AK124936:461 | ||
| − | |chr= | + | |chr=chr5 |
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=249 |
| − | |end= | + | |end=153723738 |
|end_of_center_position=153723729 | |end_of_center_position=153723729 | ||
|entrez_id=950 | |entrez_id=950 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=AMRF | + | |gene_alias=AMRF{{!}}CD36L2{{!}}EPM4{{!}}HLGP85{{!}}LGP85{{!}}LIMP-2{{!}}LIMPII{{!}}SR-BII |
|gene_description=scavenger receptor class B member 2 | |gene_description=scavenger receptor class B member 2 | ||
|gene_id=100129583 | |gene_id=100129583 | ||
| − | |gene_name= | + | |gene_name=SCARB2 |
|gene_source=HGNC:34343 | |gene_source=HGNC:34343 | ||
|gene_symbol=FAM47E | |gene_symbol=FAM47E | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_005506 | |nearest_refseq=NM_005506 | ||
|nearest_unigene=Hs.349656 | |nearest_unigene=Hs.349656 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=153723718 |
|start_of_center_position=153723728 | |start_of_center_position=153723728 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_241138.1 | |tss_id=hg_241138.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q6ZV65 | |uniprot_id=Q6ZV65 | ||
}} | }} | ||
Latest revision as of 11:58, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 153723728 |
|---|---|
| End of the center position in the TSS region: | 153723729 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000510197.5:461 NM_001242936:461 uc003hjv.4:461 AK124936:461 |
TATA-Box annotation
| Distance to TSS: | 249 |
|---|---|
| Nearest PromoterID: | NM_005506 |
| Entrez ID: | 950 |
| Nearest Unigene: | Hs.349656 |
| Nearest Refseq: | NM_005506 |
| Nearest Ensembl: | ENSG00000138760 |
| Gene Name: | SCARB2 |
| Gene Alias: | AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII |
| Gene Description: | scavenger receptor class B member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
