Difference between revisions of "TSS:Hg 100674.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=83 |entrez_id=152007 |gc_percent=0.781095 |gene_alias=C9orf19|GAPR-1|GAPR1 |gene_description=GLI pathogenesis related 2 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GAPR-1= | ||
| + | |GAPR1= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=NA | ||
|distance_to_tss=83 | |distance_to_tss=83 | ||
| + | |end=36136624 | ||
| + | |end_of_center_position=36136619 | ||
|entrez_id=152007 | |entrez_id=152007 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
| − | |gene_alias=C9orf19 | + | |gene_alias=C9orf19{{!}}GAPR-1{{!}}GAPR1 |
|gene_description=GLI pathogenesis related 2 | |gene_description=GLI pathogenesis related 2 | ||
|gene_name=GLIPR2 | |gene_name=GLIPR2 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_022343 | |nearest_refseq=NM_022343 | ||
|nearest_unigene=Hs.493819 | |nearest_unigene=Hs.493819 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=36136613 | ||
| + | |start_of_center_position=36136618 | ||
| + | |strand=- | ||
| + | |tata_box=-35(CGCCTTATAAGG,-,0.00),-33(CCTTATAAGGAG,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100674.1 | |tss_id=hg_100674.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 36136618 |
|---|---|
| End of the center position in the TSS region: | 36136619 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 83 |
|---|---|
| Nearest PromoterID: | NR_104639 |
| Entrez ID: | 152007 |
| Nearest Unigene: | Hs.493819 |
| Nearest Refseq: | NM_022343 |
| Nearest Ensembl: | ENSG00000122694 |
| Gene Name: | GLIPR2 |
| Gene Alias: | C9orf19|GAPR-1|GAPR1 |
| Gene Description: | GLI pathogenesis related 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CGCCTTATAAGG,-,0.00),-33(CCTTATAAGGAG,+,0.00) |
