Difference between revisions of "TSS:Hg 65744.1"
From referenceTSS
| Line 4: | Line 4: | ||
|BOFS= | |BOFS= | ||
|TFAP2= | |TFAP2= | ||
| − | |all_trans=NR_033910:-288 BC037167:-288 | + | |all_trans=LF331522:114 MA567099:114 LF331521:-250 MA567098:-250 NR_033910:-288 BC037167:-288 LF331520:-326 MA567097:-326 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=114 |
| − | |distance_to_tss=- | + | |distance_to_tss=-220 |
|end=10412617 | |end=10412617 | ||
|end_of_center_position=10412612 | |end_of_center_position=10412612 | ||
|entrez_id=7020 | |entrez_id=7020 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=AP-2 | + | |gene_alias=AP-2{{!}}AP-2alpha{{!}}AP2TF{{!}}BOFS{{!}}TFAP2 |
|gene_description=transcription factor AP-2 alpha | |gene_description=transcription factor AP-2 alpha | ||
|gene_id=100130275 | |gene_id=100130275 | ||
| − | |gene_name=TFAP2A | + | |gene_name=TFAP2A |
|gene_source=HGNC:40579 | |gene_source=HGNC:40579 | ||
|gene_symbol=TFAP2A-AS1 | |gene_symbol=TFAP2A-AS1 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_003220 | |nearest_refseq=NM_003220 | ||
|nearest_unigene=Hs.519880 | |nearest_unigene=Hs.519880 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=10412605 | |start=10412605 | ||
|start_of_center_position=10412611 | |start_of_center_position=10412611 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF331522 MA567099 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_65744.1 | |tss_id=hg_65744.1 | ||
Latest revision as of 08:59, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10412611 |
|---|---|
| End of the center position in the TSS region: | 10412612 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF331522 MA567099 |
|---|---|
| Distance: | 114 |
| Num_trans: | 8 |
| All_trans: | LF331522:114 MA567099:114 LF331521:-250 MA567098:-250 NR_033910:-288 BC037167:-288 LF331520:-326 MA567097:-326 |
TATA-Box annotation
| Distance to TSS: | -220 |
|---|---|
| Nearest PromoterID: | NM_001032280 |
| Entrez ID: | 7020 |
| Nearest Unigene: | Hs.519880 |
| Nearest Refseq: | NM_003220 |
| Nearest Ensembl: | ENSG00000137203 |
| Gene Name: | TFAP2A |
| Gene Alias: | AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 |
| Gene Description: | transcription factor AP-2 alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
