Difference between revisions of "TSS:Hg 16809.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000255409.7:0 uc001gzi.3:0 BC008568:1 AK312911:-23 AK130142:37 AK130200:37 AK225266:38 AK225584:38 NM_001276:-40 M80927:47 BC039132:51 BC038354:60...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CGP-39= | ||
| + | |GP-39= | ||
| + | |GP39= | ||
| + | |HC-gp39= | ||
| + | |HCGP-3P= | ||
| + | |YKL-40= | ||
| + | |YKL40= | ||
| + | |YYL-40= | ||
|all_trans=ENST00000255409.7:0 uc001gzi.3:0 BC008568:1 AK312911:-23 AK130142:37 AK130200:37 AK225266:38 AK225584:38 NM_001276:-40 M80927:47 BC039132:51 BC038354:60 EU831608:118 EU831695:118 BT007223:118 DQ890777:118 KJ896598:118 KJ896597:118 DQ893937:118 CU678995:118 | |all_trans=ENST00000255409.7:0 uc001gzi.3:0 BC008568:1 AK312911:-23 AK130142:37 AK130200:37 AK225266:38 AK225584:38 NM_001276:-40 M80927:47 BC039132:51 BC038354:60 EU831608:118 EU831695:118 BT007223:118 DQ890777:118 KJ896598:118 KJ896597:118 DQ893937:118 CU678995:118 | ||
|chr=chr1 | |chr=chr1 | ||
| Line 6: | Line 14: | ||
|distance_to_tss=47 | |distance_to_tss=47 | ||
|end=203186754 | |end=203186754 | ||
| + | |end_of_center_position=203186748 | ||
|entrez_id=1116 | |entrez_id=1116 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=ASRT7 | + | |gene_alias=ASRT7 |
|gene_description=chitinase 3 like 1 | |gene_description=chitinase 3 like 1 | ||
|gene_id=1116 | |gene_id=1116 | ||
| Line 16: | Line 25: | ||
|gene_synonyms=GP39 YKL40 | |gene_synonyms=GP39 YKL40 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hCGP-39= | ||
|hgnc_mgi_id=HGNC:1932 | |hgnc_mgi_id=HGNC:1932 | ||
|nearest_ensembl=ENSG00000133048 | |nearest_ensembl=ENSG00000133048 | ||
| Line 24: | Line 34: | ||
|species=human | |species=human | ||
|start=203186740 | |start=203186740 | ||
| + | |start_of_center_position=203186747 | ||
|strand=- | |strand=- | ||
|tata_box="-34(TCCCATAAAAGG,-,0.00),-32(CCATAAAAGGGC,+,0.00),11(AGGTATATAAAG,-,0.00)" | |tata_box="-34(TCCCATAAAAGG,-,0.00),-32(CCATAAAAGGGC,+,0.00),11(AGGTATATAAAG,-,0.00)" | ||
Revision as of 16:31, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 203186747 |
|---|---|
| End of the center position in the TSS region: | 203186748 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000255409.7 uc001gzi.3 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000255409.7:0 uc001gzi.3:0 BC008568:1 AK312911:-23 AK130142:37 AK130200:37 AK225266:38 AK225584:38 NM_001276:-40 M80927:47 BC039132:51 BC038354:60 EU831608:118 EU831695:118 BT007223:118 DQ890777:118 KJ896598:118 KJ896597:118 DQ893937:118 CU678995:118 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_001276 |
| Entrez ID: | 1116 |
| Nearest Unigene: | Hs.382202 |
| Nearest Refseq: | NM_001276 |
| Nearest Ensembl: | ENSG00000133048 |
| Gene Name: | chitinase 3 like 1 |
| Gene Alias: | ASRT7 |
| Gene Description: | chitinase 3 like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(TCCCATAAAAGG,-,0.00),-32(CCATAAAAGGGC,+,0.00),11(AGGTATATAAAG,-,0.00)" |
