Difference between revisions of "TSS:Hg 72653.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=LC027945:78 LC027946:78 LC050979:78 LC050980:78 LC050981:78 LC050982:78 LC050983:78 LC050984:78 LC050985:78 LC050986:78 LC050987:78 LC050988:78 LC050989:78 LC050990:78 LC050991:78 | + | |all_trans=NR_026816:78 NR_152829:78 NR_152831:78 NR_152832:78 NR_152833:78 NR_152834:78 NR_152835:78 NR_152836:78 NR_152830:78 NR_152837:78 NR_152828:78 NR_152838:78 NR_152839:78 LC027945:78 LC027946:78 LC050979:78 LC050980:78 LC050981:78 LC050982:78 LC050983:78 LC050984:78 LC050985:78 LC050986:78 LC050987:78 LC050988:78 LC050989:78 LC050990:78 LC050991:78 KY781167:193 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=78 | |distance=78 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-84 |
|end=31186408 | |end=31186408 | ||
|end_of_center_position=31186402 | |end_of_center_position=31186402 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=NCRNA00196 | |gene_alias=NCRNA00196 | ||
| − | |gene_description=psoriasis susceptibility 1 candidate 3 | + | |gene_description=psoriasis susceptibility 1 candidate 3 |
|gene_id=100130889 | |gene_id=100130889 | ||
| − | |gene_name=psoriasis susceptibility 1 candidate 3 | + | |gene_name=psoriasis susceptibility 1 candidate 3 |
|gene_source=HGNC:17203 | |gene_source=HGNC:17203 | ||
|gene_symbol=PSORS1C3 | |gene_symbol=PSORS1C3 | ||
| Line 18: | Line 18: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:17203 | |hgnc_mgi_id=HGNC:17203 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152837 |
|nearest_refseq=NM_001134284 | |nearest_refseq=NM_001134284 | ||
|nearest_unigene=Hs.670091 | |nearest_unigene=Hs.670091 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=31186394 | |start=31186394 | ||
|start_of_center_position=31186401 | |start_of_center_position=31186401 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-29(GACCTTAAAAGG,-,0.00),-27(CCTTAAAAGGGA,+,0.00) |
| − | |transcript_name=LC027945 LC027946 LC050979 LC050980 LC050981 LC050982 LC050983 LC050984 LC050985 LC050986 LC050987 LC050988 LC050989 LC050990 LC050991 | + | |transcript_name=NR_026816 NR_152829 NR_152831 NR_152832 NR_152833 NR_152834 NR_152835 NR_152836 NR_152830 NR_152837 NR_152828 NR_152838 NR_152839 LC027945 LC027946 LC050979 LC050980 LC050981 LC050982 LC050983 LC050984 LC050985 LC050986 LC050987 LC050988 LC050989 LC050990 LC050991 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_72653.1 | |tss_id=hg_72653.1 | ||
Revision as of 11:40, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 31186401 |
|---|---|
| End of the center position in the TSS region: | 31186402 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_026816 NR_152829 NR_152831 NR_152832 NR_152833 NR_152834 NR_152835 NR_152836 NR_152830 NR_152837 NR_152828 NR_152838 NR_152839 LC027945 LC027946 LC050979 LC050980 LC050981 LC050982 LC050983 LC050984 LC050985 LC050986 LC050987 LC050988 LC050989 LC050990 LC050991 |
|---|---|
| Distance: | 78 |
| Num_trans: | 29 |
| All_trans: | NR_026816:78 NR_152829:78 NR_152831:78 NR_152832:78 NR_152833:78 NR_152834:78 NR_152835:78 NR_152836:78 NR_152830:78 NR_152837:78 NR_152828:78 NR_152838:78 NR_152839:78 LC027945:78 LC027946:78 LC050979:78 LC050980:78 LC050981:78 LC050982:78 LC050983:78 LC050984:78 LC050985:78 LC050986:78 LC050987:78 LC050988:78 LC050989:78 LC050990:78 LC050991:78 KY781167:193 |
TATA-Box annotation
| Distance to TSS: | -84 |
|---|---|
| Nearest PromoterID: | NR_152837 |
| Entrez ID: | 100130889 |
| Nearest Unigene: | Hs.670091 |
| Nearest Refseq: | NM_001134284 |
| Nearest Ensembl: | |
| Gene Name: | psoriasis susceptibility 1 candidate 3 |
| Gene Alias: | NCRNA00196 |
| Gene Description: | psoriasis susceptibility 1 candidate 3 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -29(GACCTTAAAAGG,-,0.00),-27(CCTTAAAAGGGA,+,0.00) |
