Difference between revisions of "TSS:Hg 100688.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=31 |entrez_id=152006 |gc_percent=0.547264 |gene_alias=- |gene_description=ring finger protein 38 |gene_name=RNF38 |gene_type=pro...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000353739.8:-24 ENST00000611646.4:-24 NM_194329:-24 NM_022781:-24 uc003zzi.5:-24 uc064tar.1:-24 BC033786:-24 ENST00000259605.10:45 uc003zzh.5:45 AL136817:45 AK097653:-347 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=-24 | ||
|distance_to_tss=31 | |distance_to_tss=31 | ||
| + | |end=36400275 | ||
|entrez_id=152006 | |entrez_id=152006 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ring finger protein 38 | |gene_description=ring finger protein 38 | ||
| − | |gene_name=RNF38 | + | |gene_id=152006 |
| + | |gene_name=ring finger protein 38 | ||
| + | |gene_source=HGNC:18052 | ||
| + | |gene_symbol=RNF38 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18052 | ||
|nearest_ensembl=ENSG00000137075 | |nearest_ensembl=ENSG00000137075 | ||
|nearest_promoter_id=NM_022781 | |nearest_promoter_id=NM_022781 | ||
|nearest_refseq=NM_022781 | |nearest_refseq=NM_022781 | ||
|nearest_unigene=Hs.333503 | |nearest_unigene=Hs.333503 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=36400260 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000353739.8 ENST00000611646.4 NM_194329 NM_022781 uc003zzi.5 uc064tar.1 BC033786 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100688.1 | |tss_id=hg_100688.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9H0F5 | ||
}} | }} | ||
Revision as of 17:14, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000353739.8 ENST00000611646.4 NM_194329 NM_022781 uc003zzi.5 uc064tar.1 BC033786 |
|---|---|
| Distance: | -24 |
| Num_trans: | 11 |
| All_trans: | ENST00000353739.8:-24 ENST00000611646.4:-24 NM_194329:-24 NM_022781:-24 uc003zzi.5:-24 uc064tar.1:-24 BC033786:-24 ENST00000259605.10:45 uc003zzh.5:45 AL136817:45 AK097653:-347 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_022781 |
| Entrez ID: | 152006 |
| Nearest Unigene: | Hs.333503 |
| Nearest Refseq: | NM_022781 |
| Nearest Ensembl: | ENSG00000137075 |
| Gene Name: | ring finger protein 38 |
| Gene Alias: | - |
| Gene Description: | ring finger protein 38 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
