Difference between revisions of "TSS:Hg 154756.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HJMD= | |HJMD= | ||
|PCAD= | |PCAD= | ||
| − | |all_trans=ENST00000429102.6 | + | |all_trans=ENST00000429102.6:63 BC014462:63 BC041846:-71 ENST00000542274.5:371 AK296968:371 AK312554:373 ENST00000264012.9:380 NM_001317196:380 NM_001793:380 NM_001317195:380 AK225396:380 X63629:397 AB527800:447 KJ904433:448 EU832319:448 EU832404:448 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=63 | |distance=63 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-392 |
|end=68644930 | |end=68644930 | ||
|end_of_center_position=68644919 | |end_of_center_position=68644919 | ||
|entrez_id=1001 | |entrez_id=1001 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=CDHP | + | |gene_alias=CDHP{{!}}HJMD{{!}}PCAD |
|gene_description=cadherin 3 | |gene_description=cadherin 3 | ||
|gene_id=1001 | |gene_id=1001 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:1754 HGNC:1762 | |hgnc_mgi_id=HGNC:1754 HGNC:1762 | ||
|nearest_ensembl=ENSG00000062038 | |nearest_ensembl=ENSG00000062038 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001317195 |
|nearest_refseq=NM_001793 | |nearest_refseq=NM_001793 | ||
|nearest_unigene=Hs.191842 | |nearest_unigene=Hs.191842 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=68644906 | |start=68644906 | ||
|start_of_center_position=68644918 | |start_of_center_position=68644918 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000429102.6 | + | |transcript_name=ENST00000429102.6 BC014462 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_154756.1 | |tss_id=hg_154756.1 | ||
Revision as of 13:18, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68644918 |
|---|---|
| End of the center position in the TSS region: | 68644919 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429102.6 BC014462 |
|---|---|
| Distance: | 63 |
| Num_trans: | 16 |
| All_trans: | ENST00000429102.6:63 BC014462:63 BC041846:-71 ENST00000542274.5:371 AK296968:371 AK312554:373 ENST00000264012.9:380 NM_001317196:380 NM_001793:380 NM_001317195:380 AK225396:380 X63629:397 AB527800:447 KJ904433:448 EU832319:448 EU832404:448 |
TATA-Box annotation
| Distance to TSS: | -392 |
|---|---|
| Nearest PromoterID: | NM_001317195 |
| Entrez ID: | 1001 |
| Nearest Unigene: | Hs.191842 |
| Nearest Refseq: | NM_001793 |
| Nearest Ensembl: | ENSG00000062038 |
| Gene Name: | cadherin 15; cadherin 3 |
| Gene Alias: | CDHP|HJMD|PCAD |
| Gene Description: | cadherin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
