Difference between revisions of "TSS:Hg 221754.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HP2ALPHA2= | |HP2ALPHA2= | ||
|HPA1S= | |HPA1S= | ||
| − | |all_trans= | + | |all_trans=ENST00000355906.10:-37 NM_005143:-37 NM_001318138:-37 ENST00000570083.5:50 NM_001126102:50 ENST00000228226.12:67 ENST00000398131.6:67 ENST00000565807.6:81 ENST00000562488.5:81 ENST00000569639.5:81 AK314700:81 BC107587:81 ENST00000564499.5:84 ENST00000357763.8:84 ENST00000566821.1:84 ENST00000613898.1:84 ENST00000562526.5:84 BC058031:84 BC070299:84 AK055872:84 BC017862:84 K01763:85 L29394:85 ENST00000565574.5:87 BC121124:87 BC121125:87 ENST00000568417.6:96 X00637:97 K00422:99 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-37 |
| − | |distance_to_tss= | + | |distance_to_tss=37 |
|end=72054542 | |end=72054542 | ||
|end_of_center_position=72054542 | |end_of_center_position=72054542 | ||
|entrez_id=3240 | |entrez_id=3240 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=BP | + | |gene_alias=BP{{!}}HP2ALPHA2{{!}}HPA1S |
|gene_description=haptoglobin | |gene_description=haptoglobin | ||
|gene_id=3240 | |gene_id=3240 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:5141 | |hgnc_mgi_id=HGNC:5141 | ||
|nearest_ensembl=ENSG00000257017 | |nearest_ensembl=ENSG00000257017 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005143 |
|nearest_refseq=NM_005143 | |nearest_refseq=NM_005143 | ||
|nearest_unigene=Hs.513711 | |nearest_unigene=Hs.513711 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=72054541 | |start=72054541 | ||
|start_of_center_position=72054541 | |start_of_center_position=72054541 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=49(CAGCATAAAAAG,-,0.00),51(GCATAAAAAGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000355906.10 NM_005143 NM_001318138 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_221754.1 | |tss_id=hg_221754.1 | ||
Revision as of 08:39, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72054541 |
|---|---|
| End of the center position in the TSS region: | 72054542 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000355906.10 NM_005143 NM_001318138 |
|---|---|
| Distance: | -37 |
| Num_trans: | 29 |
| All_trans: | ENST00000355906.10:-37 NM_005143:-37 NM_001318138:-37 ENST00000570083.5:50 NM_001126102:50 ENST00000228226.12:67 ENST00000398131.6:67 ENST00000565807.6:81 ENST00000562488.5:81 ENST00000569639.5:81 AK314700:81 BC107587:81 ENST00000564499.5:84 ENST00000357763.8:84 ENST00000566821.1:84 ENST00000613898.1:84 ENST00000562526.5:84 BC058031:84 BC070299:84 AK055872:84 BC017862:84 K01763:85 L29394:85 ENST00000565574.5:87 BC121124:87 BC121125:87 ENST00000568417.6:96 X00637:97 K00422:99 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_005143 |
| Entrez ID: | 3240 |
| Nearest Unigene: | Hs.513711 |
| Nearest Refseq: | NM_005143 |
| Nearest Ensembl: | ENSG00000257017 |
| Gene Name: | haptoglobin |
| Gene Alias: | BP|HP2ALPHA2|HPA1S |
| Gene Description: | haptoglobin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(CAGCATAAAAAG,-,0.00),51(GCATAAAAAGAC,+,0.00) |
