Difference between revisions of "TSS:Hg 236268.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MT1= | |MT1= | ||
|MT1K= | |MT1K= | ||
| + | |all_trans=CU691288:-493 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-493 |
| − | |distance_to_tss= | + | |distance_to_tss=1220 |
|end=56633882 | |end=56633882 | ||
|end_of_center_position=72060700 | |end_of_center_position=72060700 | ||
|entrez_id=4499 | |entrez_id=4499 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
| − | |gene_alias=MT-1M | + | |gene_alias=MT-1M{{!}}MT-IM{{!}}MT1{{!}}MT1K |
|gene_description=metallothionein 1M | |gene_description=metallothionein 1M | ||
| − | |gene_name= | + | |gene_id=3240 |
| + | |gene_name=haptoglobin | ||
| + | |gene_source=HGNC:5141 | ||
| + | |gene_symbol=HP | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5141 | ||
|nearest_ensembl=ENSG00000205364 | |nearest_ensembl=ENSG00000205364 | ||
|nearest_promoter_id=NM_176870 | |nearest_promoter_id=NM_176870 | ||
|nearest_refseq=NM_176870 | |nearest_refseq=NM_176870 | ||
|nearest_unigene=Hs.647370 | |nearest_unigene=Hs.647370 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=56633875 | |start=56633875 | ||
|start_of_center_position=72060699 | |start_of_center_position=72060699 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=CU691288 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_236268.1 | |tss_id=hg_236268.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:52, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72060699 |
|---|---|
| End of the center position in the TSS region: | 72060700 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU691288 |
|---|---|
| Distance: | -493 |
| Num_trans: | 1 |
| All_trans: | CU691288:-493 |
TATA-Box annotation
| Distance to TSS: | 1220 |
|---|---|
| Nearest PromoterID: | NM_176870 |
| Entrez ID: | 4499 |
| Nearest Unigene: | Hs.647370 |
| Nearest Refseq: | NM_176870 |
| Nearest Ensembl: | ENSG00000205364 |
| Gene Name: | haptoglobin |
| Gene Alias: | MT-1M|MT-IM|MT1|MT1K |
| Gene Description: | metallothionein 1M |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
