Difference between revisions of "TSS:Hg 100698.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.175 |distance_to_tss=-85231 |entrez_id=9833 |gc_percent=0.825871 |gene_alias=HPK38 |gene_description=maternal embryonic leucine zipper kinase |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000488058.1:38 uc064tau.1:38 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| + | |distance=38 | ||
|distance_to_tss=-85231 | |distance_to_tss=-85231 | ||
| + | |end=36487677 | ||
|entrez_id=9833 | |entrez_id=9833 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
|gene_alias=HPK38 | |gene_alias=HPK38 | ||
|gene_description=maternal embryonic leucine zipper kinase | |gene_description=maternal embryonic leucine zipper kinase | ||
| − | |gene_name= | + | |gene_id=152006 |
| + | |gene_name=ring finger protein 38 | ||
| + | |gene_source=HGNC:18052 | ||
| + | |gene_symbol=RNF38 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18052 | ||
|nearest_ensembl=ENSG00000165304 | |nearest_ensembl=ENSG00000165304 | ||
|nearest_promoter_id=NM_001256687 | |nearest_promoter_id=NM_001256687 | ||
|nearest_refseq=NM_014791 | |nearest_refseq=NM_014791 | ||
|nearest_unigene=Hs.184339 | |nearest_unigene=Hs.184339 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=36487585 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000488058.1 uc064tau.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100698.1 | |tss_id=hg_100698.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:14, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000488058.1 uc064tau.1 |
|---|---|
| Distance: | 38 |
| Num_trans: | 2 |
| All_trans: | ENST00000488058.1:38 uc064tau.1:38 |
TATA-Box annotation
| Distance to TSS: | -85231 |
|---|---|
| Nearest PromoterID: | NM_001256687 |
| Entrez ID: | 9833 |
| Nearest Unigene: | Hs.184339 |
| Nearest Refseq: | NM_014791 |
| Nearest Ensembl: | ENSG00000165304 |
| Gene Name: | ring finger protein 38 |
| Gene Alias: | HPK38 |
| Gene Description: | maternal embryonic leucine zipper kinase |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
