Difference between revisions of "TSS:Hg 100707.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=31326 |entrez_id=5079 |gc_percent=0.477612 |gene_alias=ALL3|BSAP |gene_description=paired box 5 |gene_name=PAX5 |gene_type=prot...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BSAP= | ||
| + | |all_trans=ENST00000522932.1:400 uc064tbg.1:400 FJ626414:400 ENST00000524340.5:477 uc064tbf.1:477 FJ626406:477 FJ626407:477 FJ626408:477 FJ626409:477 FJ626410:477 FJ626411:477 FJ626412:477 FJ626413:477 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=400 | ||
|distance_to_tss=31326 | |distance_to_tss=31326 | ||
| + | |end=37003155 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=ALL3|BSAP | |gene_alias=ALL3|BSAP | ||
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
| − | |gene_name=PAX5 | + | |gene_id=5079 |
| + | |gene_name=paired box 5 | ||
| + | |gene_source=HGNC:8619 | ||
| + | |gene_symbol=PAX5 | ||
| + | |gene_synonyms=BSAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
|nearest_promoter_id=NM_001280549 | |nearest_promoter_id=NM_001280549 | ||
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=37003151 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000522932.1 uc064tbg.1 FJ626414 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100707.1 | |tss_id=hg_100707.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=C0KTE9 H0YB47 | ||
}} | }} | ||
Revision as of 17:15, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000522932.1 uc064tbg.1 FJ626414 |
|---|---|
| Distance: | 400 |
| Num_trans: | 13 |
| All_trans: | ENST00000522932.1:400 uc064tbg.1:400 FJ626414:400 ENST00000524340.5:477 uc064tbf.1:477 FJ626406:477 FJ626407:477 FJ626408:477 FJ626409:477 FJ626410:477 FJ626411:477 FJ626412:477 FJ626413:477 |
TATA-Box annotation
| Distance to TSS: | 31326 |
|---|---|
| Nearest PromoterID: | NM_001280549 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
