Difference between revisions of "TSS:Hg 242193.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000242066.9:13 ENST00000421381.5:13 NM_001163148:13 ENST00000431887.5:54 ENST00000403685.5:189 X87175:189 NM_001163149:198 | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=13 |
|distance_to_tss=22053 | |distance_to_tss=22053 | ||
|end=35642738 | |end=35642738 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=microRNA 5690 | |gene_description=microRNA 5690 | ||
| − | |gene_name= | + | |gene_id=2115 |
| + | |gene_name=ETS variant transcription factor 1 | ||
| + | |gene_source=HGNC:3490 | ||
| + | |gene_symbol=ETV1 | ||
| + | |gene_synonyms=ER81 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:3490 | ||
|nearest_ensembl=ENSG00000265527 | |nearest_ensembl=ENSG00000265527 | ||
|nearest_promoter_id=NR_049873 | |nearest_promoter_id=NR_049873 | ||
|nearest_refseq=NR_049873 | |nearest_refseq=NR_049873 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=35642733 | |start=35642733 | ||
|start_of_center_position=13991437 | |start_of_center_position=13991437 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-17(CCTTTAATACTC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000242066.9 ENST00000421381.5 NM_001163148 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242193.1 | |tss_id=hg_242193.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=C9J4P4 P50549 | ||
}} | }} | ||
Revision as of 16:10, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13991437 |
|---|---|
| End of the center position in the TSS region: | 13991438 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000242066.9 ENST00000421381.5 NM_001163148 |
|---|---|
| Distance: | 13 |
| Num_trans: | 7 |
| All_trans: | ENST00000242066.9:13 ENST00000421381.5:13 NM_001163148:13 ENST00000431887.5:54 ENST00000403685.5:189 X87175:189 NM_001163149:198 |
TATA-Box annotation
| Distance to TSS: | 22053 |
|---|---|
| Nearest PromoterID: | NR_049873 |
| Entrez ID: | 100847048 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_049873 |
| Nearest Ensembl: | ENSG00000265527 |
| Gene Name: | ETS variant transcription factor 1 |
| Gene Alias: | - |
| Gene Description: | microRNA 5690 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -17(CCTTTAATACTC,+,0.00) |
