Difference between revisions of "TSS:Hg 100717.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=324 |entrez_id=5079 |gc_percent=0.432836 |gene_alias=ALL3|BSAP |gene_description=paired box 5 |gene_name=PAX5 |gene_type=protei...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |BSAP= | ||
| + | |all_trans=ENST00000358127.8:-25 uc003zzo.3:-25 M96944:45 ENST00000377853.6:110 ENST00000377840.6:110 ENST00000377852.6:110 ENST00000523241.5:110 ENST00000520154.5:110 uc064tbd.1:110 uc010mlo.3:110 uc010mlp.3:110 uc010mls.3:110 uc010mlr.3:110 AY463952:110 AY463953:110 AY463954:110 AY463955:110 AY463956:110 AY463957:110 ENST00000520281.5:120 ENST00000446742.5:120 ENST00000522003.5:120 ENST00000523145.5:120 ENST00000523493.5:120 ENST00000414447.5:120 ENST00000377847.6:120 uc011lpw.3:120 uc011lpz.3:120 uc011lpx.3:120 uc011lqc.3:120 uc011lqa.3:120 uc011lpy.3:120 uc064tbe.1:120 FJ626419:120 FJ626420:120 FJ626421:120 FJ626422:120 FJ626423:120 FJ626424:120 FJ626425:120 BC156189:120 BC156927:120 AB529192:120 NM_001280554:-319 NM_001280553:-319 NM_001280552:-319 NM_001280551:-319 NM_001280549:-319 NM_001280548:-319 NM_001280547:-319 NM_001280555:-319 NM_016734:-319 NM_001280556:-319 NM_001280550:-319 NR_103999:-319 NR_104000:-319 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-25 | ||
|distance_to_tss=324 | |distance_to_tss=324 | ||
| + | |end=37034160 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
|gene_alias=ALL3|BSAP | |gene_alias=ALL3|BSAP | ||
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
| − | |gene_name=PAX5 | + | |gene_id=5079 |
| + | |gene_name=paired box 5 | ||
| + | |gene_source=HGNC:8619 | ||
| + | |gene_symbol=PAX5 | ||
| + | |gene_synonyms=BSAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
|nearest_promoter_id=NM_001280549 | |nearest_promoter_id=NM_001280549 | ||
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| + | |num_trans=56 | ||
| + | |species=human | ||
| + | |start=37034150 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000358127.8 uc003zzo.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100717.1 | |tss_id=hg_100717.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q02548 | ||
}} | }} | ||
Revision as of 17:15, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358127.8 uc003zzo.3 |
|---|---|
| Distance: | -25 |
| Num_trans: | 56 |
| All_trans: | ENST00000358127.8:-25 uc003zzo.3:-25 M96944:45 ENST00000377853.6:110 ENST00000377840.6:110 ENST00000377852.6:110 ENST00000523241.5:110 ENST00000520154.5:110 uc064tbd.1:110 uc010mlo.3:110 uc010mlp.3:110 uc010mls.3:110 uc010mlr.3:110 AY463952:110 AY463953:110 AY463954:110 AY463955:110 AY463956:110 AY463957:110 ENST00000520281.5:120 ENST00000446742.5:120 ENST00000522003.5:120 ENST00000523145.5:120 ENST00000523493.5:120 ENST00000414447.5:120 ENST00000377847.6:120 uc011lpw.3:120 uc011lpz.3:120 uc011lpx.3:120 uc011lqc.3:120 uc011lqa.3:120 uc011lpy.3:120 uc064tbe.1:120 FJ626419:120 FJ626420:120 FJ626421:120 FJ626422:120 FJ626423:120 FJ626424:120 FJ626425:120 BC156189:120 BC156927:120 AB529192:120 NM_001280554:-319 NM_001280553:-319 NM_001280552:-319 NM_001280551:-319 NM_001280549:-319 NM_001280548:-319 NM_001280547:-319 NM_001280555:-319 NM_016734:-319 NM_001280556:-319 NM_001280550:-319 NR_103999:-319 NR_104000:-319 |
TATA-Box annotation
| Distance to TSS: | 324 |
|---|---|
| Nearest PromoterID: | NM_001280549 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
