Difference between revisions of "TSS:Hg 100718.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |BSAP= | ||
| + | |all_trans=ENST00000358127.8:5 uc003zzo.3:5 M96944:84 ENST00000377853.6:149 ENST00000377840.6:149 ENST00000377852.6:149 ENST00000523241.5:149 ENST00000520154.5:149 uc064tbd.1:149 uc010mlo.3:149 uc010mlp.3:149 uc010mls.3:149 uc010mlr.3:149 AY463952:149 AY463953:149 AY463954:149 AY463955:149 AY463956:149 AY463957:149 ENST00000520281.5:159 ENST00000446742.5:159 ENST00000522003.5:159 ENST00000523145.5:159 ENST00000523493.5:159 ENST00000414447.5:159 ENST00000377847.6:159 uc011lpw.3:159 uc011lpz.3:159 uc011lpx.3:159 uc011lqc.3:159 uc011lqa.3:159 uc011lpy.3:159 uc064tbe.1:159 FJ626419:159 FJ626420:159 FJ626421:159 FJ626422:159 FJ626423:159 FJ626424:159 FJ626425:159 BC156189:159 BC156927:159 AB529192:159 NM_001280554:-260 NM_001280553:-260 NM_001280552:-260 NM_001280551:-260 NM_001280549:-260 NM_001280548:-260 NM_001280547:-260 NM_001280555:-260 NM_016734:-260 NM_001280556:-260 NM_001280550:-260 NR_103999:-260 NR_104000:-260 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=5 | ||
|distance_to_tss=275 | |distance_to_tss=275 | ||
| + | |end=37034219 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
|gene_alias=ALL3|BSAP | |gene_alias=ALL3|BSAP | ||
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
| − | |gene_name=PAX5 | + | |gene_id=5079 |
| + | |gene_name=paired box 5 | ||
| + | |gene_source=HGNC:8619 | ||
| + | |gene_symbol=PAX5 | ||
| + | |gene_synonyms=BSAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
|nearest_promoter_id=NM_001280549 | |nearest_promoter_id=NM_001280549 | ||
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| + | |num_trans=56 | ||
| + | |species=human | ||
| + | |start=37034189 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000358127.8 uc003zzo.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100718.1 | |tss_id=hg_100718.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q02548 | ||
}} | }} | ||
Revision as of 17:15, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358127.8 uc003zzo.3 |
|---|---|
| Distance: | 5 |
| Num_trans: | 56 |
| All_trans: | ENST00000358127.8:5 uc003zzo.3:5 M96944:84 ENST00000377853.6:149 ENST00000377840.6:149 ENST00000377852.6:149 ENST00000523241.5:149 ENST00000520154.5:149 uc064tbd.1:149 uc010mlo.3:149 uc010mlp.3:149 uc010mls.3:149 uc010mlr.3:149 AY463952:149 AY463953:149 AY463954:149 AY463955:149 AY463956:149 AY463957:149 ENST00000520281.5:159 ENST00000446742.5:159 ENST00000522003.5:159 ENST00000523145.5:159 ENST00000523493.5:159 ENST00000414447.5:159 ENST00000377847.6:159 uc011lpw.3:159 uc011lpz.3:159 uc011lpx.3:159 uc011lqc.3:159 uc011lqa.3:159 uc011lpy.3:159 uc064tbe.1:159 FJ626419:159 FJ626420:159 FJ626421:159 FJ626422:159 FJ626423:159 FJ626424:159 FJ626425:159 BC156189:159 BC156927:159 AB529192:159 NM_001280554:-260 NM_001280553:-260 NM_001280552:-260 NM_001280551:-260 NM_001280549:-260 NM_001280548:-260 NM_001280547:-260 NM_001280555:-260 NM_016734:-260 NM_001280556:-260 NM_001280550:-260 NR_103999:-260 NR_104000:-260 |
TATA-Box annotation
| Distance to TSS: | 275 |
|---|---|
| Nearest PromoterID: | NM_001280549 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
