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Difference between revisions of "TSS:Hg 236758.1"

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Line 2: Line 2:
 
|C17orf88=
 
|C17orf88=
 
|LINC00530=
 
|LINC00530=
|all_trans=KJ901106:-18 ENST00000588043.3:-118 uc010wiq.2:-118 AF143236:-118 NR_026770:-119 BC069097:-119 ENST00000632077.1:-133
+
|all_trans=AK313001:28 AK294652:46 AY358509:309 BC047456:-310 ENST00000571371.5:312 ENST00000573294.1:312 CR749607:312 ENST00000451037.7:-339 NM_020178:-339 BC068462:-352 CR936674:-390
 
|chr=chr17
 
|chr=chr17
 
|cpg_percent=0.04
 
|cpg_percent=0.04
|distance=-18
+
|distance=28
 
|distance_to_tss=119
 
|distance_to_tss=119
 
|end=43917327
 
|end=43917327
Line 11: Line 11:
 
|entrez_id=23591
 
|entrez_id=23591
 
|gc_percent=0.58209
 
|gc_percent=0.58209
|gene_alias=APR-2
+
|gene_alias=APR-2{{!}}C17orf88{{!}}LINC00530
|gene_description=family with sequence similarity 215 member A (non-protein coding)
+
|gene_description=family with sequence similarity 215 member A
|gene_name=FAM215A
+
|gene_id=56934
 +
|gene_name=carbonic anhydrase 10
 +
|gene_source=HGNC:1369
 +
|gene_symbol=CA10
 +
|gene_synonyms=CA-RPX CARPX HUCEP-15
 
|gene_type=ncRNA
 
|gene_type=ncRNA
 +
|hgnc_mgi_id=HGNC:1369
 
|nearest_ensembl=ENSG00000267496
 
|nearest_ensembl=ENSG00000267496
 
|nearest_promoter_id=NR_026770
 
|nearest_promoter_id=NR_026770
 
|nearest_refseq=NR_026770
 
|nearest_refseq=NR_026770
 
|nearest_unigene=Hs.721804
 
|nearest_unigene=Hs.721804
|num_trans=7
+
|num_trans=11
 
|species=human
 
|species=human
 
|start=43917326
 
|start=43917326
 
|start_of_center_position=52158374
 
|start_of_center_position=52158374
 
|strand=+
 
|strand=+
|transcript_name=KJ901106
+
|transcript_name=AK313001
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_236758.1
 
|tss_id=hg_236758.1
 
|tss_score=1
 
|tss_score=1
 +
|uniprot_id=
 
}}
 
}}

Revision as of 14:04, 17 June 2021

Basic information about the TSS


TSS ID:hg_236758.1
Species:human
Chr:chr17
TSS Classification:yes
Start:43917326
End:43917327
Strand:+
TSS Score:1
Start of the center position in the TSS region:52158374
End of the center position in the TSS region:52158375



Gene and protein annotation


Transcript_name:AK313001
Distance:28
GeneID:56934
HGNC/MGI_ID:HGNC:1369
UniProt_ID:
Gene_name:carbonic anhydrase 10
Gene_symbol:CA10
Gene_synonyms:CA-RPX CARPX HUCEP-15
Gene_source:HGNC:1369



Transcript annotation


Transcript_name:AK313001
Distance:28
Num_trans:11
All_trans:AK313001:28 AK294652:46 AY358509:309 BC047456:-310 ENST00000571371.5:312 ENST00000573294.1:312 CR749607:312 ENST00000451037.7:-339 NM_020178:-339 BC068462:-352 CR936674:-390



TATA-Box annotation


Distance to TSS:119
Nearest PromoterID:NR_026770
Entrez ID:23591
Nearest Unigene:Hs.721804
Nearest Refseq:NR_026770
Nearest Ensembl:ENSG00000267496
Gene Name:carbonic anhydrase 10
Gene Alias:APR-2|C17orf88|LINC00530
Gene Description:family with sequence similarity 215 member A
Gene Type:ncRNA
CpG%:0.04
GC%:0.58209
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):