Difference between revisions of "TSS:Hg 78887.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RAP1= | |RAP1= | ||
| − | |all_trans=ENST00000442563.5:0 ENST00000450873.6:0 ENST00000284957.9:0 | + | |all_trans=ENST00000442563.5:0 ENST00000450873.6:0 ENST00000284957.9:0 NM_001367742:0 NM_001287062:0 NM_001367744:0 NM_001367736:0 NM_001367735:0 NM_001367756:0 NM_001367755:0 NM_001367754:0 NM_001367753:0 NM_001367751:0 NM_001367749:0 NM_001367750:0 NM_001367748:0 NM_001367747:0 NM_014504:0 NR_160287:0 NM_001367743:0 NM_001367739:0 NM_001367734:0 NM_001367724:0 AK223329:0 AK290678:0 AJ250042:0 BC015330:-16 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=66740739 | |end=66740739 | ||
|end_of_center_position=66740733 | |end_of_center_position=66740733 | ||
|entrez_id=27342 | |entrez_id=27342 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=RABEX5 | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
|gene_description=RAB guanine nucleotide exchange factor 1 | |gene_description=RAB guanine nucleotide exchange factor 1 | ||
|gene_id=27342 | |gene_id=27342 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:17676 | |hgnc_mgi_id=HGNC:17676 | ||
|nearest_ensembl=ENSG00000154710 | |nearest_ensembl=ENSG00000154710 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367744 |
|nearest_refseq=NM_014504 | |nearest_refseq=NM_014504 | ||
|nearest_unigene=Hs.530053 | |nearest_unigene=Hs.530053 | ||
| − | |num_trans= | + | |num_trans=27 |
|rabex-5= | |rabex-5= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=66740732 | |start_of_center_position=66740732 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000442563.5 ENST00000450873.6 ENST00000284957.9 | + | |transcript_name=ENST00000442563.5 ENST00000450873.6 ENST00000284957.9 NM_001367742 NM_001287062 NM_001367744 NM_001367736 NM_001367735 NM_001367756 NM_001367755 NM_001367754 NM_001367753 NM_001367751 NM_001367749 NM_001367750 NM_001367748 NM_001367747 NM_014504 NR_160287 NM_001367743 NM_001367739 NM_001367734 NM_001367724 AK223329 AK290678 AJ250042 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_78887.1 | |tss_id=hg_78887.1 | ||
Revision as of 14:05, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 66740732 |
|---|---|
| End of the center position in the TSS region: | 66740733 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000442563.5 ENST00000450873.6 ENST00000284957.9 NM_001367742 NM_001287062 NM_001367744 NM_001367736 NM_001367735 NM_001367756 NM_001367755 NM_001367754 NM_001367753 NM_001367751 NM_001367749 NM_001367750 NM_001367748 NM_001367747 NM_014504 NR_160287 NM_001367743 NM_001367739 NM_001367734 NM_001367724 AK223329 AK290678 AJ250042 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000442563.5:0 ENST00000450873.6:0 ENST00000284957.9:0 NM_001367742:0 NM_001287062:0 NM_001367744:0 NM_001367736:0 NM_001367735:0 NM_001367756:0 NM_001367755:0 NM_001367754:0 NM_001367753:0 NM_001367751:0 NM_001367749:0 NM_001367750:0 NM_001367748:0 NM_001367747:0 NM_014504:0 NR_160287:0 NM_001367743:0 NM_001367739:0 NM_001367734:0 NM_001367724:0 AK223329:0 AK290678:0 AJ250042:0 BC015330:-16 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001367744 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | RAB guanine nucleotide exchange factor 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
