Difference between revisions of "TSS:Hg 79083.1"
From referenceTSS
| Line 5: | Line 5: | ||
|WBSCR5= | |WBSCR5= | ||
|WSCR5= | |WSCR5= | ||
| − | |all_trans=ENST00000491595 | + | |all_trans=ENST00000491595.1:0 BC001609:9 ENST00000475494.5:18 AK002099:31 ENST00000398475.5:45 BC006080:45 ENST00000361082.7:70 ENST00000275635.11:70 ENST00000488266.5:70 ENST00000460943.6:70 NM_014146:70 NM_032464:70 NM_032463:70 AF161531:70 AF252611:70 AF252612:70 AF252614:70 AK225150:70 AK290916:73 AK290074:73 AF252613:85 ENST00000470709.1:87 LF384044:-165 MA619621:-165 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-77 |
|end=74209936 | |end=74209936 | ||
|end_of_center_position=74209929 | |end_of_center_position=74209929 | ||
|entrez_id=7462 | |entrez_id=7462 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=HSPC046 | + | |gene_alias=HSPC046{{!}}LAB{{!}}NTAL{{!}}WBSCR15{{!}}WBSCR5{{!}}WSCR5 |
| − | |gene_description=linker for activation of T | + | |gene_description=linker for activation of T cells family member 2 |
|gene_id=7462 | |gene_id=7462 | ||
| − | |gene_name=linker for activation of T | + | |gene_name=linker for activation of T cells family member 2 |
|gene_source=HGNC:12749 | |gene_source=HGNC:12749 | ||
|gene_symbol=LAT2 | |gene_symbol=LAT2 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_014146 | |nearest_refseq=NM_014146 | ||
|nearest_unigene=Hs.741249 | |nearest_unigene=Hs.741249 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=74209921 | |start=74209921 | ||
|start_of_center_position=74209928 | |start_of_center_position=74209928 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000491595 | + | |transcript_name=ENST00000491595.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_79083.1 | |tss_id=hg_79083.1 | ||
Revision as of 14:10, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74209928 |
|---|---|
| End of the center position in the TSS region: | 74209929 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000491595.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000491595.1:0 BC001609:9 ENST00000475494.5:18 AK002099:31 ENST00000398475.5:45 BC006080:45 ENST00000361082.7:70 ENST00000275635.11:70 ENST00000488266.5:70 ENST00000460943.6:70 NM_014146:70 NM_032464:70 NM_032463:70 AF161531:70 AF252611:70 AF252612:70 AF252614:70 AK225150:70 AK290916:73 AK290074:73 AF252613:85 ENST00000470709.1:87 LF384044:-165 MA619621:-165 |
TATA-Box annotation
| Distance to TSS: | -77 |
|---|---|
| Nearest PromoterID: | NM_032463 |
| Entrez ID: | 7462 |
| Nearest Unigene: | Hs.741249 |
| Nearest Refseq: | NM_014146 |
| Nearest Ensembl: | ENSG00000086730 |
| Gene Name: | linker for activation of T cells family member 2 |
| Gene Alias: | HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5 |
| Gene Description: | linker for activation of T cells family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
