Difference between revisions of "TSS:Hg 79084.1"
From referenceTSS
| Line 5: | Line 5: | ||
|WBSCR5= | |WBSCR5= | ||
|WSCR5= | |WSCR5= | ||
| − | |all_trans=ENST00000475494.5 | + | |all_trans=ENST00000475494.5:0 AK002099:0 BC001609:-2 ENST00000398475.5:5 BC006080:5 ENST00000491595.1:-20 ENST00000361082.7:30 ENST00000275635.11:30 ENST00000488266.5:30 ENST00000460943.6:30 NM_014146:30 NM_032464:30 NM_032463:30 AF161531:30 AF252611:30 AF252612:30 AF252614:30 AK225150:30 AK290916:33 AK290074:33 AF252613:45 ENST00000470709.1:47 LF384044:-190 MA619621:-190 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-45 |
|end=74209976 | |end=74209976 | ||
|end_of_center_position=74209962 | |end_of_center_position=74209962 | ||
|entrez_id=7462 | |entrez_id=7462 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=HSPC046 | + | |gene_alias=HSPC046{{!}}LAB{{!}}NTAL{{!}}WBSCR15{{!}}WBSCR5{{!}}WSCR5 |
| − | |gene_description=linker for activation of T | + | |gene_description=linker for activation of T cells family member 2 |
|gene_id=7462 | |gene_id=7462 | ||
| − | |gene_name=linker for activation of T | + | |gene_name=linker for activation of T cells family member 2 |
|gene_source=HGNC:12749 | |gene_source=HGNC:12749 | ||
|gene_symbol=LAT2 | |gene_symbol=LAT2 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_014146 | |nearest_refseq=NM_014146 | ||
|nearest_unigene=Hs.741249 | |nearest_unigene=Hs.741249 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=74209946 | |start=74209946 | ||
|start_of_center_position=74209961 | |start_of_center_position=74209961 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000475494.5 | + | |transcript_name=ENST00000475494.5 AK002099 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_79084.1 | |tss_id=hg_79084.1 | ||
Revision as of 14:10, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74209961 |
|---|---|
| End of the center position in the TSS region: | 74209962 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000475494.5 AK002099 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000475494.5:0 AK002099:0 BC001609:-2 ENST00000398475.5:5 BC006080:5 ENST00000491595.1:-20 ENST00000361082.7:30 ENST00000275635.11:30 ENST00000488266.5:30 ENST00000460943.6:30 NM_014146:30 NM_032464:30 NM_032463:30 AF161531:30 AF252611:30 AF252612:30 AF252614:30 AK225150:30 AK290916:33 AK290074:33 AF252613:45 ENST00000470709.1:47 LF384044:-190 MA619621:-190 |
TATA-Box annotation
| Distance to TSS: | -45 |
|---|---|
| Nearest PromoterID: | NM_032463 |
| Entrez ID: | 7462 |
| Nearest Unigene: | Hs.741249 |
| Nearest Refseq: | NM_014146 |
| Nearest Ensembl: | ENSG00000086730 |
| Gene Name: | linker for activation of T cells family member 2 |
| Gene Alias: | HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5 |
| Gene Description: | linker for activation of T cells family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
