Difference between revisions of "TSS:Mm 20145.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK088946:13 AK169029:14 ENSMUST00000056732.3:-19 NM_001081975 | + | |all_trans=AK088946:13 AK169029:14 ENSMUST00000056732.3:-19 NM_001081975:19 AK018514:19 AK011317:22 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 9: | Line 9: | ||
|entrez_id=100034361 | |entrez_id=100034361 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias= | + | |gene_alias=Mfap1a |
|gene_description=microfibrillar-associated protein 1B | |gene_description=microfibrillar-associated protein 1B | ||
|gene_id=100034361 | |gene_id=100034361 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001081975 | |nearest_refseq=NM_001081975 | ||
|nearest_unigene=Mm.270393 | |nearest_unigene=Mm.270393 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=121474041 | |start=121474041 | ||
|start_of_center_position=121474044 | |start_of_center_position=121474044 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-72(CCCTTTAAGCGA,+,0.00) |
|transcript_name=AK088946 | |transcript_name=AK088946 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 21:36, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 121474044 |
|---|---|
| End of the center position in the TSS region: | 121474045 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK088946 |
|---|---|
| Distance: | 13 |
| Num_trans: | 6 |
| All_trans: | AK088946:13 AK169029:14 ENSMUST00000056732.3:-19 NM_001081975:19 AK018514:19 AK011317:22 |
TATA-Box annotation
| Distance to TSS: | -22 |
|---|---|
| Nearest PromoterID: | NM_001081975 |
| Entrez ID: | 100034361 |
| Nearest Unigene: | Mm.270393 |
| Nearest Refseq: | NM_001081975 |
| Nearest Ensembl: | ENSMUSG00000048222 |
| Gene Name: | microfibrillar-associated protein 1B |
| Gene Alias: | Mfap1a |
| Gene Description: | microfibrillar-associated protein 1B |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -72(CCCTTTAAGCGA,+,0.00) |
