Difference between revisions of "TSS:Hg 168691.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000574093 | + | |all_trans=ENST00000574093.1:-25 ENST00000571868.1:-39 ENST00000576919.1:-261 ENST00000650606.1:-284 NR_165247:-284 AK096111:-284 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=-25 | |distance=-25 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-21122 |
|end=81330390 | |end=81330390 | ||
|end_of_center_position=81330371 | |end_of_center_position=81330371 | ||
| − | |entrez_id= | + | |entrez_id=284185 |
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias= | + | |gene_alias=C17orf55 |
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 482 |
|gene_id=284186 | |gene_id=284186 | ||
| − | |gene_name= | + | |gene_name=TMEM105 long non-coding RNA |
|gene_source=HGNC:26794 | |gene_source=HGNC:26794 | ||
|gene_symbol=TMEM105 | |gene_symbol=TMEM105 | ||
|gene_synonyms=FLJ38792 | |gene_synonyms=FLJ38792 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=HGNC:26794 | |hgnc_mgi_id=HGNC:26794 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_038080 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_178519 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.631762 |
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=81330350 | |start=81330350 | ||
|start_of_center_position=81330370 | |start_of_center_position=81330370 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000574093 | + | |transcript_name=ENST00000574093.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_168691.1 | |tss_id=hg_168691.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:39, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 81330370 |
|---|---|
| End of the center position in the TSS region: | 81330371 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000574093.1 |
|---|---|
| Distance: | -25 |
| Num_trans: | 6 |
| All_trans: | ENST00000574093.1:-25 ENST00000571868.1:-39 ENST00000576919.1:-261 ENST00000650606.1:-284 NR_165247:-284 AK096111:-284 |
TATA-Box annotation
| Distance to TSS: | -21122 |
|---|---|
| Nearest PromoterID: | NR_038080 |
| Entrez ID: | 284185 |
| Nearest Unigene: | Hs.631762 |
| Nearest Refseq: | NM_178519 |
| Nearest Ensembl: | |
| Gene Name: | TMEM105 long non-coding RNA |
| Gene Alias: | C17orf55 |
| Gene Description: | long intergenic non-protein coding RNA 482 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
