Difference between revisions of "TSS:Hg 170931.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000587254.5:0 ENST00000586421.1 | + | |all_trans=ENST00000587254.5:0 ENST00000586421.1:0 NR_028339:0 NR_028340:0 ENST00000589574.1:73 ENST00000588226.5:111 ENST00000585422.1:111 AK056304:111 ENST00000662611.1:142 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001145731 | |nearest_refseq=NM_001145731 | ||
|nearest_unigene=Hs.352602 | |nearest_unigene=Hs.352602 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=80147911 | |start=80147911 | ||
|start_of_center_position=80147924 | |start_of_center_position=80147924 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=89(GGCTATAAATGT,-,0.00) |
| − | |transcript_name=ENST00000587254.5 ENST00000586421.1 NR_028340 | + | |transcript_name=ENST00000587254.5 ENST00000586421.1 NR_028339 NR_028340 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_170931.1 | |tss_id=hg_170931.1 | ||
Revision as of 19:30, 16 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 80147924 |
|---|---|
| End of the center position in the TSS region: | 80147925 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000587254.5 ENST00000586421.1 NR_028339 NR_028340 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000587254.5:0 ENST00000586421.1:0 NR_028339:0 NR_028340:0 ENST00000589574.1:73 ENST00000588226.5:111 ENST00000585422.1:111 AK056304:111 ENST00000662611.1:142 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NR_028340 |
| Entrez ID: | 100130522 |
| Nearest Unigene: | Hs.352602 |
| Nearest Refseq: | NM_001145731 |
| Nearest Ensembl: | ENSG00000267270 |
| Gene Name: | PARD6G antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | PARD6G antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 89(GGCTATAAATGT,-,0.00) |
