Difference between revisions of "TSS:Hg 109446.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=79029 |entrez_id=220965 |gc_percent=0.537313 |gene_alias=FAM13C1 |gene_description=family with sequence similarity 13 member C...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000513377.1:-108 uc057tkf.1:-108 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-108 | ||
|distance_to_tss=79029 | |distance_to_tss=79029 | ||
| + | |end=59283573 | ||
|entrez_id=220965 | |entrez_id=220965 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
|gene_alias=FAM13C1 | |gene_alias=FAM13C1 | ||
|gene_description=family with sequence similarity 13 member C | |gene_description=family with sequence similarity 13 member C | ||
| − | |gene_name=FAM13C | + | |gene_id=220965 |
| + | |gene_name=family with sequence similarity 13 member C | ||
| + | |gene_source=HGNC:19371 | ||
| + | |gene_symbol=FAM13C | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
|nearest_promoter_id=NM_001347851 | |nearest_promoter_id=NM_001347851 | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=59283556 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000513377.1 uc057tkf.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109446.1 | |tss_id=hg_109446.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:27, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000513377.1 uc057tkf.1 |
|---|---|
| Distance: | -108 |
| Num_trans: | 2 |
| All_trans: | ENST00000513377.1:-108 uc057tkf.1:-108 |
TATA-Box annotation
| Distance to TSS: | 79029 |
|---|---|
| Nearest PromoterID: | NM_001347851 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
