Difference between revisions of "TSS:Hg 109458.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=59 |entrez_id=220965 |gc_percent=0.60199 |gene_alias=FAM13C1 |gene_description=family with sequence similarity 13 member C |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000503444.1:10 uc057tko.1:10 ENST00000468840.6:-55 NM_001143773:-55 uc010qie.3:-55 AK299924:-55 ENST00000470220.5:139 uc057tkj.1:139 ENST00000618427.4:246 ENST00000611933.4:246 NM_001166698:246 NM_198215:246 NM_001001971:246 uc031wid.2:246 uc031wif.2:246 BC064431:246 ENST00000622363.4:250 uc057tkb.1:250 AK316542:250 ENST00000621119.4:276 uc057tka.1:276 ENST00000618804.4:290 uc031wie.2:290 BC036453:290 ENST00000614220.4:293 uc057tjz.1:293 ENST00000619059.4:318 uc057tkl.1:318 AK289796:320 AK294805:331 ENST00000435852.6:332 uc031wig.2:332 ENST00000512919.5:-333 uc057tkn.1:-333 ENST00000422313.6:380 uc001jkp.4:380 KJ895852:380 KJ900467:380 DQ894404:380 EU176262:380 CU687880:380 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=10 | ||
|distance_to_tss=59 | |distance_to_tss=59 | ||
| + | |end=59362848 | ||
|entrez_id=220965 | |entrez_id=220965 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=FAM13C1 | |gene_alias=FAM13C1 | ||
|gene_description=family with sequence similarity 13 member C | |gene_description=family with sequence similarity 13 member C | ||
| − | |gene_name=FAM13C | + | |gene_id=220965 |
| + | |gene_name=family with sequence similarity 13 member C | ||
| + | |gene_source=HGNC:19371 | ||
| + | |gene_symbol=FAM13C | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
|nearest_promoter_id=NM_001347847 | |nearest_promoter_id=NM_001347847 | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| + | |num_trans=41 | ||
| + | |species=human | ||
| + | |start=59362839 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000503444.1 uc057tko.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109458.1 | |tss_id=hg_109458.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:28, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000503444.1 uc057tko.1 |
|---|---|
| Distance: | 10 |
| Num_trans: | 41 |
| All_trans: | ENST00000503444.1:10 uc057tko.1:10 ENST00000468840.6:-55 NM_001143773:-55 uc010qie.3:-55 AK299924:-55 ENST00000470220.5:139 uc057tkj.1:139 ENST00000618427.4:246 ENST00000611933.4:246 NM_001166698:246 NM_198215:246 NM_001001971:246 uc031wid.2:246 uc031wif.2:246 BC064431:246 ENST00000622363.4:250 uc057tkb.1:250 AK316542:250 ENST00000621119.4:276 uc057tka.1:276 ENST00000618804.4:290 uc031wie.2:290 BC036453:290 ENST00000614220.4:293 uc057tjz.1:293 ENST00000619059.4:318 uc057tkl.1:318 AK289796:320 AK294805:331 ENST00000435852.6:332 uc031wig.2:332 ENST00000512919.5:-333 uc057tkn.1:-333 ENST00000422313.6:380 uc001jkp.4:380 KJ895852:380 KJ900467:380 DQ894404:380 EU176262:380 CU687880:380 |
TATA-Box annotation
| Distance to TSS: | 59 |
|---|---|
| Nearest PromoterID: | NM_001347847 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
