Difference between revisions of "TSS:Hg 100744.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=-13706 |entrez_id=22844 |gc_percent=0.467662 |gene_alias=FRMD2 |gene_description=FERM and PDZ domain containing 1 |gene_name=FR...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000409159.2:40 U66622:237 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=40 | ||
|distance_to_tss=-13706 | |distance_to_tss=-13706 | ||
| + | |end=37637366 | ||
|entrez_id=22844 | |entrez_id=22844 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=FRMD2 | |gene_alias=FRMD2 | ||
|gene_description=FERM and PDZ domain containing 1 | |gene_description=FERM and PDZ domain containing 1 | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name="RAB1C, member RAS oncogene family pseudogene" | ||
| + | |gene_source=HGNC:23683 | ||
| + | |gene_symbol=RAB1C | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23683 | ||
|nearest_ensembl=ENSG00000070601 | |nearest_ensembl=ENSG00000070601 | ||
|nearest_promoter_id=NM_014907 | |nearest_promoter_id=NM_014907 | ||
|nearest_refseq=NM_014907 | |nearest_refseq=NM_014907 | ||
|nearest_unigene=Hs.163990 | |nearest_unigene=Hs.163990 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=37637332 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000409159.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100744.1 | |tss_id=hg_100744.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:13, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000409159.2 |
|---|---|
| Distance: | 40 |
| Num_trans: | 2 |
| All_trans: | ENST00000409159.2:40 U66622:237 |
TATA-Box annotation
| Distance to TSS: | -13706 |
|---|---|
| Nearest PromoterID: | NM_014907 |
| Entrez ID: | 22844 |
| Nearest Unigene: | Hs.163990 |
| Nearest Refseq: | NM_014907 |
| Nearest Ensembl: | ENSG00000070601 |
| Gene Name: | "RAB1C, member RAS oncogene family pseudogene" |
| Gene Alias: | FRMD2 |
| Gene Description: | FERM and PDZ domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
