Difference between revisions of "TSS:Hg 173445.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000587836.1:5 NR_046376 | + | |all_trans=ENST00000587836.1:5 NR_046376:5 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 12: | Line 12: | ||
|gene_description=uncharacterized LOC100128568 | |gene_description=uncharacterized LOC100128568 | ||
|gene_id=100128568 | |gene_id=100128568 | ||
| − | |gene_name= | + | |gene_name=RANBP3 divergent transcript |
| − | |gene_source= | + | |gene_source=HGNC:55312 |
| − | |gene_symbol= | + | |gene_symbol=RANBP3-DT |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:55312 |
|nearest_ensembl=ENSG00000266983 | |nearest_ensembl=ENSG00000266983 | ||
|nearest_promoter_id=NR_046376 | |nearest_promoter_id=NR_046376 | ||
|nearest_refseq=NR_046376 | |nearest_refseq=NR_046376 | ||
|nearest_unigene=Hs.624525 | |nearest_unigene=Hs.624525 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=5978355 | |start=5978355 | ||
|start_of_center_position=5978376 | |start_of_center_position=5978376 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000587836.1 NR_046376 | + | |transcript_name=ENST00000587836.1 NR_046376 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_173445.1 | |tss_id=hg_173445.1 | ||
Revision as of 20:28, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5978376 |
|---|---|
| End of the center position in the TSS region: | 5978377 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000587836.1 NR_046376 |
|---|---|
| Distance: | 5 |
| Num_trans: | 2 |
| All_trans: | ENST00000587836.1:5 NR_046376:5 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NR_046376 |
| Entrez ID: | 100128568 |
| Nearest Unigene: | Hs.624525 |
| Nearest Refseq: | NR_046376 |
| Nearest Ensembl: | ENSG00000266983 |
| Gene Name: | RANBP3 divergent transcript |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128568 |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
