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Difference between revisions of "TSS:Hg 101871.1"

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{{TSSDetail
 
{{TSSDetail
 
|CLLP=
 
|CLLP=
|all_trans=BC117208:-3 BC117234:-3 HQ258655:7 AB451283:9 AB451415:9 AF080071:-21 AF135021:-24 U97067:-24 AF006070:-24 AF030233:-26 AK314677:-38 ENST00000325551.9:-39 NM_003798:-39 NM_001286974:-39 AK223230:-39 AK022926:-39 ENST00000374593.4:-52 ENST00000374595.8:-62 AK022834:-69 LP895629:-69
+
|all_trans=HGNC:2512
 
|alpha-CATU=
 
|alpha-CATU=
 
|chr=chr9
 
|chr=chr9
Line 24: Line 24:
 
|nearest_refseq=NM_003798
 
|nearest_refseq=NM_003798
 
|nearest_unigene=Hs.58488
 
|nearest_unigene=Hs.58488
|num_trans=20
+
|num_trans=8727
 
|species=human
 
|species=human
 
|start=109013450
 
|start=109013450

Latest revision as of 18:14, 19 July 2021

Basic information about the TSS


TSS ID:hg_101871.1
Species:human
Chr:chr9
TSS Classification:yes
Start:109013450
End:109013460
Strand:-
TSS Score:1
Start of the center position in the TSS region:109013455
End of the center position in the TSS region:109013456



Gene and protein annotation


Transcript_name:BC117208 BC117234
Distance:-3
GeneID:8727
HGNC/MGI_ID:HGNC:2512
UniProt_ID:
Gene_name:catenin alpha like 1
Gene_symbol:CTNNAL1
Gene_synonyms:CLLP alpha-CATU
Gene_source:HGNC:2512



Transcript annotation


Transcript_name:BC117208 BC117234
Distance:-3
Num_trans:8727
All_trans:HGNC:2512



TATA-Box annotation


Distance to TSS:44
Nearest PromoterID:NM_001286974
Entrez ID:8727
Nearest Unigene:Hs.58488
Nearest Refseq:NM_003798
Nearest Ensembl:ENSG00000119326
Gene Name:catenin alpha like 1
Gene Alias:ACRP|CLLP|alpha-CATU
Gene Description:catenin alpha like 1
Gene Type:protein-coding
CpG%:0.16
GC%:0.771144
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):