Difference between revisions of "TSS:Hg 10244.1"
From referenceTSS
| Line 7: | Line 7: | ||
|alcalpha1= | |alcalpha1= | ||
|alcalpha2= | |alcalpha2= | ||
| − | |all_trans= | + | |all_trans=HGNC:17447 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_014944 | |nearest_refseq=NM_014944 | ||
|nearest_unigene=Hs.29665 | |nearest_unigene=Hs.29665 | ||
| − | |num_trans= | + | |num_trans=22883 |
|species=human | |species=human | ||
|start=9823935 | |start=9823935 | ||
|start_of_center_position=9823940 | |start_of_center_position=9823940 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000377298.9 | + | |transcript_name=ENST00000377298.9 AK304813 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10244.1 | |tss_id=hg_10244.1 | ||
Latest revision as of 18:27, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9823940 |
|---|---|
| End of the center position in the TSS region: | 9823941 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377298.9 AK304813 |
|---|---|
| Distance: | -19 |
| Num_trans: | 22883 |
| All_trans: | HGNC:17447 |
TATA-Box annotation
| Distance to TSS: | 585 |
|---|---|
| Nearest PromoterID: | NM_014944 |
| Entrez ID: | 22883 |
| Nearest Unigene: | Hs.29665 |
| Nearest Refseq: | NM_014944 |
| Nearest Ensembl: | ENSG00000171603 |
| Gene Name: | calsyntenin 1 |
| Gene Alias: | ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 |
| Gene Description: | calsyntenin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
