Difference between revisions of "TSS:Hg 103834.1"
From referenceTSS
| Line 35: | Line 35: | ||
|tata_box=-36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGT,+,0.00) | |tata_box=-36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGT,+,0.00) | ||
|transcript_name=ENST00000638035.1 | |transcript_name=ENST00000638035.1 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103834.1 | |tss_id=hg_103834.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=O95319 | |uniprot_id=O95319 | ||
}} | }} | ||
Revision as of 18:53, 12 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 10798575 |
|---|---|
| End of the center position in the TSS region: | 10798576 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000638035.1 |
|---|---|
| Distance: | 35 |
| Num_trans: | 6 |
| All_trans: | ENST00000638035.1:35 ENST00000636488.1:43 NM_001326327:144 NM_001326328:144 NM_001326326:144 ENST00000637215.1:-174 |
TATA-Box annotation
| Distance to TSS: | -149 |
|---|---|
| Nearest PromoterID: | NM_001326328 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGT,+,0.00) |
