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Difference between revisions of "TSS:Hg 1061.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000400548.6:-8 BC015324:-8 LF357166:-14 MA592743:-14 ENST00000469076.5:-19 AK172745:-19 AK125580:-21 AK130171:-21 ENST00000375155.7:-23 ENST00000375153.8:-23 NM_001287531:-23 NM_001040125:-23 NM_017765:-23 NM_001040126:-23 NR_109848:-23 AK130175:-23 AK000327:-23 LF206691:-179 MA442268:-179 ENST00000497827.1:378
+
|all_trans=HGNC:26001
 
|chr=chr1
 
|chr=chr1
 
|cpg_percent=0.105
 
|cpg_percent=0.105
Line 22: Line 22:
 
|nearest_refseq=NM_017765
 
|nearest_refseq=NM_017765
 
|nearest_unigene=Hs.647620
 
|nearest_unigene=Hs.647620
|num_trans=20
+
|num_trans=54896
 
|species=human
 
|species=human
 
|start=19312348
 
|start=19312348

Latest revision as of 19:45, 19 July 2021

Basic information about the TSS


TSS ID:hg_1061.1
Species:human
Chr:chr1
TSS Classification:yes
Start:19312348
End:19312351
Strand:+
TSS Score:1
Start of the center position in the TSS region:19312349
End of the center position in the TSS region:19312350



Gene and protein annotation


Transcript_name:ENST00000400548.6 BC015324
Distance:-8
GeneID:54896
HGNC/MGI_ID:HGNC:26001
UniProt_ID:A0A024RAA1
Gene_name:solute carrier family 66 member 1
Gene_symbol:SLC66A1
Gene_synonyms:FLJ20320 LAAT-1 LAAT1
Gene_source:HGNC:26001



Transcript annotation


Transcript_name:ENST00000400548.6 BC015324
Distance:-8
Num_trans:54896
All_trans:HGNC:26001



TATA-Box annotation


Distance to TSS:24
Nearest PromoterID:NR_109848
Entrez ID:54896
Nearest Unigene:Hs.647620
Nearest Refseq:NM_017765
Nearest Ensembl:ENSG00000040487
Gene Name:solute carrier family 66 member 1
Gene Alias:LAAT-1|LAAT1|PQLC2
Gene Description:solute carrier family 66 member 1
Gene Type:protein-coding
CpG%:0.105
GC%:0.756219
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):