Difference between revisions of "TSS:Hg 100836.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=326 |entrez_id=100507299 |gc_percent=0.60199 |gene_alias=MAMDC2-AS2 |gene_description=SMC5 antisense RNA 1 (head to head) |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=CR936772:-302 ENST00000594708.1:-310 uc004ahq.2:-310 AK124136:-310 NR_039990:-318 BC040840:-318 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=-302 | ||
|distance_to_tss=326 | |distance_to_tss=326 | ||
| + | |end=70258556 | ||
|entrez_id=100507299 | |entrez_id=100507299 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=MAMDC2-AS2 | |gene_alias=MAMDC2-AS2 | ||
|gene_description=SMC5 antisense RNA 1 (head to head) | |gene_description=SMC5 antisense RNA 1 (head to head) | ||
| − | |gene_name=SMC5-AS1 | + | |gene_id=100507299 |
| + | |gene_name=SMC5 antisense RNA 1 (head to head) | ||
| + | |gene_source=HGNC:48718 | ||
| + | |gene_symbol=SMC5-AS1 | ||
| + | |gene_synonyms=MAMDC2-AS2 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:48718 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_039990 | |nearest_promoter_id=NR_039990 | ||
|nearest_refseq=NR_039990 | |nearest_refseq=NR_039990 | ||
|nearest_unigene=Hs.556816 | |nearest_unigene=Hs.556816 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=70258539 | ||
| + | |strand=- | ||
| + | |transcript_name=CR936772 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100836.1 | |tss_id=hg_100836.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:17, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | CR936772 |
|---|---|
| Distance: | -302 |
| Num_trans: | 6 |
| All_trans: | CR936772:-302 ENST00000594708.1:-310 uc004ahq.2:-310 AK124136:-310 NR_039990:-318 BC040840:-318 |
TATA-Box annotation
| Distance to TSS: | 326 |
|---|---|
| Nearest PromoterID: | NR_039990 |
| Entrez ID: | 100507299 |
| Nearest Unigene: | Hs.556816 |
| Nearest Refseq: | NR_039990 |
| Nearest Ensembl: | |
| Gene Name: | SMC5 antisense RNA 1 (head to head) |
| Gene Alias: | MAMDC2-AS2 |
| Gene Description: | SMC5 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.07 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
