Difference between revisions of "TSS:Hg 243122.1"
From referenceTSS
| Line 13: | Line 13: | ||
|TRPM2= | |TRPM2= | ||
|all_trans=ENST00000420366.5:23 NM_001142533:23 AK056068:23 NM_001142534:45 ENST00000629203.2:53 AK291393:53 ENST00000414380.1:297 | |all_trans=ENST00000420366.5:23 NM_001142533:23 AK056068:23 NM_001142534:45 ENST00000629203.2:53 AK291393:53 ENST00000414380.1:297 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=23 | |distance=23 | ||
|distance_to_tss=25 | |distance_to_tss=25 | ||
| − | |end= | + | |end=127755327 |
|end_of_center_position=127755327 | |end_of_center_position=127755327 | ||
|entrez_id=1191 | |entrez_id=1191 | ||
| Line 36: | Line 36: | ||
|num_trans=7 | |num_trans=7 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=127755326 |
|start_of_center_position=127755326 | |start_of_center_position=127755326 | ||
| − | |strand= | + | |strand=- |
|tata_box=48(GTATTTATAGCG,+,0.00) | |tata_box=48(GTATTTATAGCG,+,0.00) | ||
|transcript_name=ENST00000420366.5 NM_001142533 AK056068 | |transcript_name=ENST00000420366.5 NM_001142533 AK056068 | ||
Revision as of 12:43, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 127755326 |
|---|---|
| End of the center position in the TSS region: | 127755327 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000420366.5 NM_001142533 AK056068 |
|---|---|
| Distance: | 23 |
| Num_trans: | 7 |
| All_trans: | ENST00000420366.5:23 NM_001142533:23 AK056068:23 NM_001142534:45 ENST00000629203.2:53 AK291393:53 ENST00000414380.1:297 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_001831 |
| Entrez ID: | 1191 |
| Nearest Unigene: | Hs.436657 |
| Nearest Refseq: | NM_001831 |
| Nearest Ensembl: | ENSG00000120885 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 |
| Gene Description: | clusterin |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 48(GTATTTATAGCG,+,0.00) |
