Difference between revisions of "TSS:Hg 243179.1"
From referenceTSS
| Line 7: | Line 7: | ||
|XRCC7= | |XRCC7= | ||
|all_trans=AB384458:1 ENST00000313050.11:-72 LF346431:110 MA582008:110 | |all_trans=AB384458:1 ENST00000313050.11:-72 LF346431:110 MA582008:110 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=1 | |distance=1 | ||
|distance_to_tss=17 | |distance_to_tss=17 | ||
| − | |end= | + | |end=136477617 |
|end_of_center_position=136477617 | |end_of_center_position=136477617 | ||
|entrez_id=5591 | |entrez_id=5591 | ||
| Line 31: | Line 31: | ||
|p350= | |p350= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=136477616 |
|start_of_center_position=136477616 | |start_of_center_position=136477616 | ||
| − | |strand= | + | |strand=- |
|transcript_name=AB384458 | |transcript_name=AB384458 | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_243179.1 | |tss_id=hg_243179.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:44, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136477616 |
|---|---|
| End of the center position in the TSS region: | 136477617 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB384458 |
|---|---|
| Distance: | 1 |
| Num_trans: | 4 |
| All_trans: | AB384458:1 ENST00000313050.11:-72 LF346431:110 MA582008:110 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001081640 |
| Entrez ID: | 5591 |
| Nearest Unigene: | Hs.491682 |
| Nearest Refseq: | NM_006904 |
| Nearest Ensembl: | ENSG00000253729 |
| Gene Name: | SEC16 homolog A, endoplasmic reticulum export factor |
| Gene Alias: | DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 |
| Gene Description: | protein kinase, DNA-activated, catalytic subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
