Difference between revisions of "TSS:Hg 243272.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=AB385522:-41 KJ900500:-50 AB095935:-62 ENST00000399703.6:-350 NM_001331100:-350 NM_147195:-350 LP896544:-414 BC056266:-414 | |all_trans=AB385522:-41 KJ900500:-50 AB095935:-62 ENST00000399703.6:-350 NM_001331100:-350 NM_147195:-350 LP896544:-414 BC056266:-414 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-41 | |distance=-41 | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
| − | |end= | + | |end=38620246 |
|end_of_center_position=38620246 | |end_of_center_position=38620246 | ||
|entrez_id=503614 | |entrez_id=503614 | ||
| Line 24: | Line 24: | ||
|num_trans=8 | |num_trans=8 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=38620245 |
|start_of_center_position=38620245 | |start_of_center_position=38620245 | ||
|strand=- | |strand=- | ||
|transcript_name=AB385522 | |transcript_name=AB385522 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243272.1 | |tss_id=hg_243272.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:46, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 38620245 |
|---|---|
| End of the center position in the TSS region: | 38620246 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB385522 |
|---|---|
| Distance: | -41 |
| Num_trans: | 8 |
| All_trans: | AB385522:-41 KJ900500:-50 AB095935:-62 ENST00000399703.6:-350 NM_001331100:-350 NM_147195:-350 LP896544:-414 BC056266:-414 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001040705 |
| Entrez ID: | 503614 |
| Nearest Unigene: | Hs.520874 |
| Nearest Refseq: | NM_001040705 |
| Nearest Ensembl: | ENSG00000198129 |
| Gene Name: | ankyrin repeat domain 18A |
| Gene Alias: | HsT21816 |
| Gene Description: | defensin beta 107B |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.41791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
