Difference between revisions of "TSS:Hg 243970.1"
From referenceTSS
| Line 11: | Line 11: | ||
|distance=10 | |distance=10 | ||
|distance_to_tss=23 | |distance_to_tss=23 | ||
| − | |end= | + | |end=48801783 |
|end_of_center_position=48801783 | |end_of_center_position=48801783 | ||
|entrez_id=695 | |entrez_id=695 | ||
| Line 30: | Line 30: | ||
|num_trans=40 | |num_trans=40 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=48801782 |
|start_of_center_position=48801782 | |start_of_center_position=48801782 | ||
| − | |strand= | + | |strand=+ |
|tata_box=-80(CCGCCTAAAGGG,-,0.00) | |tata_box=-80(CCGCCTAAAGGG,-,0.00) | ||
|transcript_name=ENST00000469223.5 | |transcript_name=ENST00000469223.5 | ||
Revision as of 13:02, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 48801782 |
|---|---|
| End of the center position in the TSS region: | 48801783 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000469223.5 |
|---|---|
| Distance: | 10 |
| Num_trans: | 40 |
| All_trans: | ENST00000469223.5:10 ENST00000376643.6:-83 AK302926:97 ENST00000376610.6:166 NM_001321229:166 ENST00000483656.5:208 ENST00000462730.5:233 ENST00000376619.6:251 ENST00000477528.5:272 AL137696:272 ENST00000465269.5:281 BC005872:281 ENST00000334136.11:284 NM_001321231:284 NM_001321228:284 NM_006044:284 NM_001321230:284 NM_001321226:284 NM_001321227:284 NR_135593:284 NR_135592:284 AK024083:291 AJ011972:297 ENST00000476625.5:299 ENST00000646703.1:301 AB020708:318 BC069243:319 ENST00000477561.5:327 ENST00000643659.1:350 ENST00000643374.1:376 AK295884:382 ENST00000644068.1:385 NM_001321225:-385 ENST00000438518.5:-387 ENST00000441703.6:403 ENST00000643934.1:404 ENST00000423941.5:-406 BC011498:407 AK095124:410 ENST00000489352.5:424 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_001287344 |
| Entrez ID: | 695 |
| Nearest Unigene: | Hs.159494 |
| Nearest Refseq: | NM_000061 |
| Nearest Ensembl: | ENSG00000010671 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | AGMX1|AT|ATK|BPK|IGHD3|IMD1|PSCTK1|XLA |
| Gene Description: | Bruton tyrosine kinase |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(CCGCCTAAAGGG,-,0.00) |
