Difference between revisions of "TSS:Hg 111087.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=7 |entrez_id=100038246 |gc_percent=0.577114 |gene_alias=APT-B7|TD1|TDI |gene_description=TLX1 neighbor |gene_name=TLX1NB |gene_t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TD1= | ||
| + | |TDI= | ||
| + | |all_trans=NR_130723:-1 NR_130722:-1 BC019674:-1 ENST00000445873.5:8 ENST00000425505.1:8 uc001ksv.4:8 uc057vml.1:8 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=-1 | ||
|distance_to_tss=7 | |distance_to_tss=7 | ||
| + | |end=101131145 | ||
|entrez_id=100038246 | |entrez_id=100038246 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
|gene_alias=APT-B7|TD1|TDI | |gene_alias=APT-B7|TD1|TDI | ||
|gene_description=TLX1 neighbor | |gene_description=TLX1 neighbor | ||
| − | |gene_name=TLX1NB | + | |gene_id=100038246 |
| + | |gene_name=TLX1 neighbor | ||
| + | |gene_source=HGNC:37183 | ||
| + | |gene_symbol=TLX1NB | ||
| + | |gene_synonyms=APT-B7 TD1 TDI | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:37183 | ||
|nearest_ensembl=ENSG00000236311 | |nearest_ensembl=ENSG00000236311 | ||
|nearest_promoter_id=NR_130723 | |nearest_promoter_id=NR_130723 | ||
|nearest_refseq=NM_001085398 | |nearest_refseq=NM_001085398 | ||
|nearest_unigene=Hs.368784 | |nearest_unigene=Hs.368784 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=101131133 | ||
| + | |strand=- | ||
|tata_box="63(AGGCTTAAAAGG,-,0.00),65(GCTTAAAAGGAA,+,0.00)" | |tata_box="63(AGGCTTAAAAGG,-,0.00),65(GCTTAAAAGGAA,+,0.00)" | ||
| + | |transcript_name=NR_130723 NR_130722 BC019674 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_111087.1 | |tss_id=hg_111087.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 01:37, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NR_130723 NR_130722 BC019674 |
|---|---|
| Distance: | -1 |
| Num_trans: | 7 |
| All_trans: | NR_130723:-1 NR_130722:-1 BC019674:-1 ENST00000445873.5:8 ENST00000425505.1:8 uc001ksv.4:8 uc057vml.1:8 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NR_130723 |
| Entrez ID: | 100038246 |
| Nearest Unigene: | Hs.368784 |
| Nearest Refseq: | NM_001085398 |
| Nearest Ensembl: | ENSG00000236311 |
| Gene Name: | TLX1 neighbor |
| Gene Alias: | APT-B7 |
| Gene Description: | TLX1 neighbor |
| Gene Type: | ncRNA |
| CpG%: | 0.05 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "63(AGGCTTAAAAGG,-,0.00),65(GCTTAAAAGGAA,+,0.00)" |
