Difference between revisions of "TSS:Hg 100933.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=17 |entrez_id=23670 |gc_percent=0.746269 |gene_alias=- |gene_description=transmembrane protein 2 |gene_name=TMEM2 |gene_type=pro...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000377044.8:-5 NM_013390:-5 NM_001135820:-5 uc011lsa.1:-5 AK056807:308 ENST00000543165.1:342 uc064trx.1:342 AK300405:342 AF137030:363 AB037833:378 BC146780:378 ENST00000377066.9:469 ENST00000542935.5:469 uc010mos.3:469 uc064trr.1:469 BC140773:469 BC144510:469 BC171782:469 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=-5 | ||
|distance_to_tss=17 | |distance_to_tss=17 | ||
| + | |end=71768879 | ||
|entrez_id=23670 | |entrez_id=23670 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=transmembrane protein 2 | |gene_description=transmembrane protein 2 | ||
| − | |gene_name=TMEM2 | + | |gene_id=23670 |
| + | |gene_name=transmembrane protein 2 | ||
| + | |gene_source=HGNC:11869 | ||
| + | |gene_symbol=TMEM2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11869 | ||
|nearest_ensembl=ENSG00000135048 | |nearest_ensembl=ENSG00000135048 | ||
|nearest_promoter_id=NM_001135820 | |nearest_promoter_id=NM_001135820 | ||
|nearest_refseq=NM_013390 | |nearest_refseq=NM_013390 | ||
|nearest_unigene=Hs.494146 | |nearest_unigene=Hs.494146 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=71768854 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000377044.8 NM_013390 NM_001135820 uc011lsa.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100933.1 | |tss_id=hg_100933.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R229 Q9UHN6 | ||
}} | }} | ||
Revision as of 18:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000377044.8 NM_013390 NM_001135820 uc011lsa.1 |
|---|---|
| Distance: | -5 |
| Num_trans: | 18 |
| All_trans: | ENST00000377044.8:-5 NM_013390:-5 NM_001135820:-5 uc011lsa.1:-5 AK056807:308 ENST00000543165.1:342 uc064trx.1:342 AK300405:342 AF137030:363 AB037833:378 BC146780:378 ENST00000377066.9:469 ENST00000542935.5:469 uc010mos.3:469 uc064trr.1:469 BC140773:469 BC144510:469 BC171782:469 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001135820 |
| Entrez ID: | 23670 |
| Nearest Unigene: | Hs.494146 |
| Nearest Refseq: | NM_013390 |
| Nearest Ensembl: | ENSG00000135048 |
| Gene Name: | transmembrane protein 2 |
| Gene Alias: | - |
| Gene Description: | transmembrane protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
