Difference between revisions of "TSS:Hg 196295.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000481929.5:0 ENST00000441703.5:0 ENST00000426196.5:0 ENST00000489352.5:0 uc064zaq.1:0 uc064zar.1:0 uc064zas.1:0 uc064zat.1:0 AK295884:0 BC011498:...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HD6= | ||
| + | |JM21= | ||
| + | |PPP1R90= | ||
|all_trans=ENST00000481929.5:0 ENST00000441703.5:0 ENST00000426196.5:0 ENST00000489352.5:0 uc064zaq.1:0 uc064zar.1:0 uc064zas.1:0 uc064zat.1:0 AK295884:0 BC011498:0 AK095124:0 ENST00000477561.5:-49 uc064zap.1:-49 BC069243:-57 AB020708:-58 ENST00000476625.5:-77 uc064zao.1:-77 NM_006044:-79 AJ011972:-79 AK024083:-85 ENST00000465269.5:-95 uc064zan.1:-95 BC005872:-95 ENST00000477528.5:-104 uc010nig.2:-104 AL137696:-104 ENST00000376619.6:-125 uc004dkt.2:-125 ENST00000462730.5:-143 uc064zam.1:-143 ENST00000334136.9:-164 uc004dks.2:-164 ENST00000483656.5:-168 uc064zal.1:-168 ENST00000376610.6:-210 uc064zak.1:-210 AK302926:-279 ENST00000443563.5:298 uc064zau.1:298 ENST00000440653.1:333 uc064zav.1:333 ENST00000469223.5:-366 uc064zaj.1:-366 ENST00000376643.6:-459 uc064zai.1:-459 KJ902051:474 BT006649:476 AB385398:476 AF132609:476 BC013737:494 | |all_trans=ENST00000481929.5:0 ENST00000441703.5:0 ENST00000426196.5:0 ENST00000489352.5:0 uc064zaq.1:0 uc064zar.1:0 uc064zas.1:0 uc064zat.1:0 AK295884:0 BC011498:0 AK095124:0 ENST00000477561.5:-49 uc064zap.1:-49 BC069243:-57 AB020708:-58 ENST00000476625.5:-77 uc064zao.1:-77 NM_006044:-79 AJ011972:-79 AK024083:-85 ENST00000465269.5:-95 uc064zan.1:-95 BC005872:-95 ENST00000477528.5:-104 uc010nig.2:-104 AL137696:-104 ENST00000376619.6:-125 uc004dkt.2:-125 ENST00000462730.5:-143 uc064zam.1:-143 ENST00000334136.9:-164 uc004dks.2:-164 ENST00000483656.5:-168 uc064zal.1:-168 ENST00000376610.6:-210 uc064zak.1:-210 AK302926:-279 ENST00000443563.5:298 uc064zau.1:298 ENST00000440653.1:333 uc064zav.1:333 ENST00000469223.5:-366 uc064zaj.1:-366 ENST00000376643.6:-459 uc064zai.1:-459 KJ902051:474 BT006649:476 AB385398:476 AF132609:476 BC013737:494 | ||
|chr=chrX | |chr=chrX | ||
| Line 6: | Line 9: | ||
|distance_to_tss=172 | |distance_to_tss=172 | ||
|end=48802217 | |end=48802217 | ||
| + | |end_of_center_position=48802188 | ||
|entrez_id=10013 | |entrez_id=10013 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=CPBHM | + | |gene_alias=CPBHM |
|gene_description=histone deacetylase 6 | |gene_description=histone deacetylase 6 | ||
|gene_id=10013 | |gene_id=10013 | ||
| Line 24: | Line 28: | ||
|species=human | |species=human | ||
|start=48802158 | |start=48802158 | ||
| + | |start_of_center_position=48802187 | ||
|strand=+ | |strand=+ | ||
|tata_box="-35(GGCCCGATAAGG,-,0.00)" | |tata_box="-35(GGCCCGATAAGG,-,0.00)" | ||
Revision as of 20:48, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48802187 |
|---|---|
| End of the center position in the TSS region: | 48802188 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000481929.5 ENST00000441703.5 ENST00000426196.5 ENST00000489352.5 uc064zaq.1 uc064zar.1 uc064zas.1 uc064zat.1 AK295884 BC011498 AK095124 |
|---|---|
| Distance: | 0 |
| Num_trans: | 50 |
| All_trans: | ENST00000481929.5:0 ENST00000441703.5:0 ENST00000426196.5:0 ENST00000489352.5:0 uc064zaq.1:0 uc064zar.1:0 uc064zas.1:0 uc064zat.1:0 AK295884:0 BC011498:0 AK095124:0 ENST00000477561.5:-49 uc064zap.1:-49 BC069243:-57 AB020708:-58 ENST00000476625.5:-77 uc064zao.1:-77 NM_006044:-79 AJ011972:-79 AK024083:-85 ENST00000465269.5:-95 uc064zan.1:-95 BC005872:-95 ENST00000477528.5:-104 uc010nig.2:-104 AL137696:-104 ENST00000376619.6:-125 uc004dkt.2:-125 ENST00000462730.5:-143 uc064zam.1:-143 ENST00000334136.9:-164 uc004dks.2:-164 ENST00000483656.5:-168 uc064zal.1:-168 ENST00000376610.6:-210 uc064zak.1:-210 AK302926:-279 ENST00000443563.5:298 uc064zau.1:298 ENST00000440653.1:333 uc064zav.1:333 ENST00000469223.5:-366 uc064zaj.1:-366 ENST00000376643.6:-459 uc064zai.1:-459 KJ902051:474 BT006649:476 AB385398:476 AF132609:476 BC013737:494 |
TATA-Box annotation
| Distance to TSS: | 172 |
|---|---|
| Nearest PromoterID: | NR_135593 |
| Entrez ID: | 10013 |
| Nearest Unigene: | Hs.6764 |
| Nearest Refseq: | NM_006044 |
| Nearest Ensembl: | ENSG00000094631 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | CPBHM |
| Gene Description: | histone deacetylase 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GGCCCGATAAGG,-,0.00)" |
