Difference between revisions of "TSS:Hg 111743.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=-223 |entrez_id=2263 |gc_percent=0.726368 |gene_alias=BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 |gene_descri...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BEK= | ||
| + | |BFR-1= | ||
| + | |CD332= | ||
| + | |CEK3= | ||
| + | |CFD1= | ||
| + | |ECT1= | ||
| + | |JWS= | ||
| + | |K-SAM= | ||
| + | |KGFR= | ||
| + | |TK14= | ||
| + | |TK25= | ||
| + | |all_trans=ENST00000613048.4:216 ENST00000356226.8:216 NR_073009:216 NM_000141:216 NM_001144918:216 NM_001144917:216 NM_022970:216 NM_001320658:216 NM_001144919:216 uc057wkv.1:216 uc010qtm.3:216 BC039243:216 ENST00000369059.5:222 uc057wkz.1:222 ENST00000360144.7:242 uc057wlf.1:242 AK026508:242 ENST00000604236.5:261 uc057wky.1:261 BC096749:264 ENST00000457416.6:271 uc057wle.1:271 M97193:271 M35718:276 ENST00000336553.10:278 uc057wli.1:278 ENST00000369060.8:376 ENST00000359354.6:376 uc010qtl.3:376 uc057wll.1:376 M87771:376 ENST00000369058.7:440 uc057wlh.1:440 AB030073:440 M80634:440 AB030075:440 AB030074:440 AB030076:440 AB030077:440 AB030078:440 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=216 | ||
|distance_to_tss=-223 | |distance_to_tss=-223 | ||
| + | |end=121598688 | ||
|entrez_id=2263 | |entrez_id=2263 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 | |gene_alias=BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 | ||
|gene_description=fibroblast growth factor receptor 2 | |gene_description=fibroblast growth factor receptor 2 | ||
| − | |gene_name=FGFR2 | + | |gene_id=2263 |
| + | |gene_name=fibroblast growth factor receptor 2 | ||
| + | |gene_source=HGNC:3689 | ||
| + | |gene_symbol=FGFR2 | ||
| + | |gene_synonyms=CD332 CEK3 ECT1 K-SAM TK14 TK25 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3689 | ||
|nearest_ensembl=ENSG00000066468 | |nearest_ensembl=ENSG00000066468 | ||
|nearest_promoter_id=NR_073009 | |nearest_promoter_id=NR_073009 | ||
|nearest_refseq=NM_000141 | |nearest_refseq=NM_000141 | ||
|nearest_unigene=Hs.533683 | |nearest_unigene=Hs.533683 | ||
| + | |num_trans=40 | ||
| + | |species=human | ||
| + | |start=121598673 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000613048.4 ENST00000356226.8 NR_073009 NM_000141 NM_001144918 NM_001144917 NM_022970 NM_001320658 NM_001144919 uc057wkv.1 uc010qtm.3 BC039243 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_111743.1 | |tss_id=hg_111743.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=D2CGD1 P21802 | ||
}} | }} | ||
Revision as of 02:05, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000613048.4 ENST00000356226.8 NR_073009 NM_000141 NM_001144918 NM_001144917 NM_022970 NM_001320658 NM_001144919 uc057wkv.1 uc010qtm.3 BC039243 |
|---|---|
| Distance: | 216 |
| Num_trans: | 40 |
| All_trans: | ENST00000613048.4:216 ENST00000356226.8:216 NR_073009:216 NM_000141:216 NM_001144918:216 NM_001144917:216 NM_022970:216 NM_001320658:216 NM_001144919:216 uc057wkv.1:216 uc010qtm.3:216 BC039243:216 ENST00000369059.5:222 uc057wkz.1:222 ENST00000360144.7:242 uc057wlf.1:242 AK026508:242 ENST00000604236.5:261 uc057wky.1:261 BC096749:264 ENST00000457416.6:271 uc057wle.1:271 M97193:271 M35718:276 ENST00000336553.10:278 uc057wli.1:278 ENST00000369060.8:376 ENST00000359354.6:376 uc010qtl.3:376 uc057wll.1:376 M87771:376 ENST00000369058.7:440 uc057wlh.1:440 AB030073:440 M80634:440 AB030075:440 AB030074:440 AB030076:440 AB030077:440 AB030078:440 |
TATA-Box annotation
| Distance to TSS: | -223 |
|---|---|
| Nearest PromoterID: | NR_073009 |
| Entrez ID: | 2263 |
| Nearest Unigene: | Hs.533683 |
| Nearest Refseq: | NM_000141 |
| Nearest Ensembl: | ENSG00000066468 |
| Gene Name: | fibroblast growth factor receptor 2 |
| Gene Alias: | BBDS |
| Gene Description: | fibroblast growth factor receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
