Difference between revisions of "TSS:Hg 101019.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-153 |entrez_id=140803 |gc_percent=0.542289 |gene_alias=CHAK2|HMGX|HOMG|HOMG1|HSH |gene_description=transient receptor potential...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HMGX= | ||
| + | |HOMG= | ||
| + | |HOMG1= | ||
| + | |HSH= | ||
| + | |all_trans=AF448232:12 BC156137:12 AY333282:-40 AY333285:-40 AY333286:-40 AY333287:-40 AY333288:-40 ENST00000449912.6:148 NM_001177310:148 uc022bib.1:148 AY333283:148 ENST00000360774.5:-215 ENST00000359047.2:-215 NM_017662:-215 uc004ajl.1:-215 uc004ajn.2:-215 AF350881:-215 AK057748:-215 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=12 | ||
|distance_to_tss=-153 | |distance_to_tss=-153 | ||
| + | |end=74887879 | ||
|entrez_id=140803 | |entrez_id=140803 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
|gene_alias=CHAK2|HMGX|HOMG|HOMG1|HSH | |gene_alias=CHAK2|HMGX|HOMG|HOMG1|HSH | ||
|gene_description=transient receptor potential cation channel subfamily M member 6 | |gene_description=transient receptor potential cation channel subfamily M member 6 | ||
| − | |gene_name=TRPM6 | + | |gene_id=140803 |
| + | |gene_name=transient receptor potential cation channel subfamily M member 6 | ||
| + | |gene_source=HGNC:17995 | ||
| + | |gene_symbol=TRPM6 | ||
| + | |gene_synonyms=CHAK2 FLJ22628 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17995 | ||
|nearest_ensembl=ENSG00000119121 | |nearest_ensembl=ENSG00000119121 | ||
|nearest_promoter_id=NM_001177310 | |nearest_promoter_id=NM_001177310 | ||
|nearest_refseq=NM_017662 | |nearest_refseq=NM_017662 | ||
|nearest_unigene=Hs.272225 | |nearest_unigene=Hs.272225 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=74887867 | ||
| + | |strand=- | ||
|tata_box="-81(GGCTGTAAAAGG,-,0.00)" | |tata_box="-81(GGCTGTAAAAGG,-,0.00)" | ||
| + | |transcript_name=AF448232 BC156137 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101019.1 | |tss_id=hg_101019.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:25, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF448232 BC156137 |
|---|---|
| Distance: | 12 |
| Num_trans: | 18 |
| All_trans: | AF448232:12 BC156137:12 AY333282:-40 AY333285:-40 AY333286:-40 AY333287:-40 AY333288:-40 ENST00000449912.6:148 NM_001177310:148 uc022bib.1:148 AY333283:148 ENST00000360774.5:-215 ENST00000359047.2:-215 NM_017662:-215 uc004ajl.1:-215 uc004ajn.2:-215 AF350881:-215 AK057748:-215 |
TATA-Box annotation
| Distance to TSS: | -153 |
|---|---|
| Nearest PromoterID: | NM_001177310 |
| Entrez ID: | 140803 |
| Nearest Unigene: | Hs.272225 |
| Nearest Refseq: | NM_017662 |
| Nearest Ensembl: | ENSG00000119121 |
| Gene Name: | transient receptor potential cation channel subfamily M member 6 |
| Gene Alias: | CHAK2 |
| Gene Description: | transient receptor potential cation channel subfamily M member 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-81(GGCTGTAAAAGG,-,0.00)" |
