Difference between revisions of "TSS:Hg 221754.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000570083.5:50 NM_001126102:50 NM_001318138:50 NM_005143:50 uc010cgm.4:50 ENST00000355906.9:53 uc002fbr.5:53 ENST00000228226.12:67 ENST00000398131...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HP2ALPHA2= | ||
| + | |HPA1S= | ||
|all_trans=ENST00000570083.5:50 NM_001126102:50 NM_001318138:50 NM_005143:50 uc010cgm.4:50 ENST00000355906.9:53 uc002fbr.5:53 ENST00000228226.12:67 ENST00000398131.6:67 uc059wxx.1:67 uc059wxy.1:67 ENST00000565807.6:81 ENST00000562488.5:81 ENST00000569639.5:81 uc059wxz.1:81 uc059wya.1:81 uc059wyb.1:81 AK314700:81 BC107587:81 ENST00000564499.5:84 ENST00000357763.8:84 ENST00000613898.1:84 ENST00000566821.1:84 ENST00000562526.5:84 uc059wyc.1:84 uc059wyd.1:84 uc059wye.1:84 uc059wyf.1:84 uc059wyg.1:84 BC058031:84 BC070299:84 AK055872:84 BC017862:84 K01763:85 L29394:85 ENST00000565574.5:87 uc002fbt.7:87 BC121124:87 BC121125:87 ENST00000568417.6:96 uc059wyh.1:96 X00637:97 K00422:99 | |all_trans=ENST00000570083.5:50 NM_001126102:50 NM_001318138:50 NM_005143:50 uc010cgm.4:50 ENST00000355906.9:53 uc002fbr.5:53 ENST00000228226.12:67 ENST00000398131.6:67 uc059wxx.1:67 uc059wxy.1:67 ENST00000565807.6:81 ENST00000562488.5:81 ENST00000569639.5:81 uc059wxz.1:81 uc059wya.1:81 uc059wyb.1:81 AK314700:81 BC107587:81 ENST00000564499.5:84 ENST00000357763.8:84 ENST00000613898.1:84 ENST00000566821.1:84 ENST00000562526.5:84 uc059wyc.1:84 uc059wyd.1:84 uc059wye.1:84 uc059wyf.1:84 uc059wyg.1:84 BC058031:84 BC070299:84 AK055872:84 BC017862:84 K01763:85 L29394:85 ENST00000565574.5:87 uc002fbt.7:87 BC121124:87 BC121125:87 ENST00000568417.6:96 uc059wyh.1:96 X00637:97 K00422:99 | ||
|chr=chr16 | |chr=chr16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-50 | |distance_to_tss=-50 | ||
|end=72054542 | |end=72054542 | ||
| + | |end_of_center_position=72054542 | ||
|entrez_id=3240 | |entrez_id=3240 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=BP | + | |gene_alias=BP |
|gene_description=haptoglobin | |gene_description=haptoglobin | ||
|gene_id=3240 | |gene_id=3240 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=72054541 | |start=72054541 | ||
| + | |start_of_center_position=72054541 | ||
|strand=+ | |strand=+ | ||
|tata_box="49(CAGCATAAAAAG,-,0.00),51(GCATAAAAAGAC,+,0.00)" | |tata_box="49(CAGCATAAAAAG,-,0.00),51(GCATAAAAAGAC,+,0.00)" | ||
Revision as of 20:56, 14 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72054541 |
|---|---|
| End of the center position in the TSS region: | 72054542 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000570083.5 NM_001126102 NM_001318138 NM_005143 uc010cgm.4 |
|---|---|
| Distance: | 50 |
| Num_trans: | 43 |
| All_trans: | ENST00000570083.5:50 NM_001126102:50 NM_001318138:50 NM_005143:50 uc010cgm.4:50 ENST00000355906.9:53 uc002fbr.5:53 ENST00000228226.12:67 ENST00000398131.6:67 uc059wxx.1:67 uc059wxy.1:67 ENST00000565807.6:81 ENST00000562488.5:81 ENST00000569639.5:81 uc059wxz.1:81 uc059wya.1:81 uc059wyb.1:81 AK314700:81 BC107587:81 ENST00000564499.5:84 ENST00000357763.8:84 ENST00000613898.1:84 ENST00000566821.1:84 ENST00000562526.5:84 uc059wyc.1:84 uc059wyd.1:84 uc059wye.1:84 uc059wyf.1:84 uc059wyg.1:84 BC058031:84 BC070299:84 AK055872:84 BC017862:84 K01763:85 L29394:85 ENST00000565574.5:87 uc002fbt.7:87 BC121124:87 BC121125:87 ENST00000568417.6:96 uc059wyh.1:96 X00637:97 K00422:99 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NM_001126102 |
| Entrez ID: | 3240 |
| Nearest Unigene: | Hs.513711 |
| Nearest Refseq: | NM_005143 |
| Nearest Ensembl: | ENSG00000257017 |
| Gene Name: | haptoglobin |
| Gene Alias: | BP |
| Gene Description: | haptoglobin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "49(CAGCATAAAAAG,-,0.00),51(GCATAAAAAGAC,+,0.00)" |
