Difference between revisions of "TSS:Hg 232141.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001144916:-16 AK308621:-16 ENST00000491111.1:89 uc057wlp.1:89 ENST00000369061.8:275 NM_023029:275 NM_001144914:275 NM_001144913:275 uc057wkt.1:275 EN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BEK= | ||
| + | |BFR-1= | ||
| + | |CD332= | ||
| + | |CEK3= | ||
| + | |CFD1= | ||
| + | |ECT1= | ||
| + | |JWS= | ||
| + | |K-SAM= | ||
| + | |KGFR= | ||
| + | |TK14= | ||
| + | |TK25= | ||
|all_trans=NM_001144916:-16 AK308621:-16 ENST00000491111.1:89 uc057wlp.1:89 ENST00000369061.8:275 NM_023029:275 NM_001144914:275 NM_001144913:275 uc057wkt.1:275 ENST00000611527.1:355 uc057wlo.1:355 ENST00000369056.5:401 uc057wlg.1:401 X56191:401 ENST00000346997.6:413 ENST00000351936.10:413 uc057wlc.1:413 uc057wld.1:413 Z71929:413 M55614:413 KJ896817:422 KR712030:422 KR712031:422 KR712032:422 KR712033:422 AB587574:423 AB084153:425 EF057068:425 AB821309:425 EU826598:425 EU826601:425 EU826599:425 EU826600:425 ENST00000613324.4:478 uc057wln.1:478 | |all_trans=NM_001144916:-16 AK308621:-16 ENST00000491111.1:89 uc057wlp.1:89 ENST00000369061.8:275 NM_023029:275 NM_001144914:275 NM_001144913:275 uc057wkt.1:275 ENST00000611527.1:355 uc057wlo.1:355 ENST00000369056.5:401 uc057wlg.1:401 X56191:401 ENST00000346997.6:413 ENST00000351936.10:413 uc057wlc.1:413 uc057wld.1:413 Z71929:413 M55614:413 KJ896817:422 KR712030:422 KR712031:422 KR712032:422 KR712033:422 AB587574:423 AB084153:425 EF057068:425 AB821309:425 EU826598:425 EU826601:425 EU826599:425 EU826600:425 ENST00000613324.4:478 uc057wln.1:478 | ||
|chr=chr10 | |chr=chr10 | ||
| Line 6: | Line 17: | ||
|distance_to_tss=16 | |distance_to_tss=16 | ||
|end=121594242 | |end=121594242 | ||
| + | |end_of_center_position=12217439 | ||
|entrez_id=2263 | |entrez_id=2263 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=BBDS | + | |gene_alias=BBDS |
|gene_description=fibroblast growth factor receptor 2 | |gene_description=fibroblast growth factor receptor 2 | ||
|gene_id=2263 | |gene_id=2263 | ||
| Line 24: | Line 36: | ||
|species=human | |species=human | ||
|start=121594241 | |start=121594241 | ||
| + | |start_of_center_position=12217438 | ||
|strand=- | |strand=- | ||
|tata_box="64(GCTTTTAAAAAG,+,0.00),64(GCTTTTAAAAAG,-,0.00)" | |tata_box="64(GCTTTTAAAAAG,+,0.00),64(GCTTTTAAAAAG,-,0.00)" | ||
Revision as of 23:50, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 12217438 |
|---|---|
| End of the center position in the TSS region: | 12217439 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001144916 AK308621 |
|---|---|
| Distance: | -16 |
| Num_trans: | 35 |
| All_trans: | NM_001144916:-16 AK308621:-16 ENST00000491111.1:89 uc057wlp.1:89 ENST00000369061.8:275 NM_023029:275 NM_001144914:275 NM_001144913:275 uc057wkt.1:275 ENST00000611527.1:355 uc057wlo.1:355 ENST00000369056.5:401 uc057wlg.1:401 X56191:401 ENST00000346997.6:413 ENST00000351936.10:413 uc057wlc.1:413 uc057wld.1:413 Z71929:413 M55614:413 KJ896817:422 KR712030:422 KR712031:422 KR712032:422 KR712033:422 AB587574:423 AB084153:425 EF057068:425 AB821309:425 EU826598:425 EU826601:425 EU826599:425 EU826600:425 ENST00000613324.4:478 uc057wln.1:478 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001144916 |
| Entrez ID: | 2263 |
| Nearest Unigene: | Hs.533683 |
| Nearest Refseq: | NM_000141 |
| Nearest Ensembl: | ENSG00000066468 |
| Gene Name: | fibroblast growth factor receptor 2 |
| Gene Alias: | BBDS |
| Gene Description: | fibroblast growth factor receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "64(GCTTTTAAAAAG,+,0.00),64(GCTTTTAAAAAG,-,0.00)" |
