Difference between revisions of "TSS:Hg 232425.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr10 |cpg_percent=0.02 |distance= |distance_to_tss=556 |end=79559318 |entrez_id=729238 |gc_percent=0.631841 |gene_alias=COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PSAP= | ||
| + | |PSP-A= | ||
| + | |PSPA= | ||
| + | |SFTP1= | ||
| + | |SFTPA2B= | ||
| + | |SP-2A= | ||
| + | |SP-A= | ||
| + | |SPA2= | ||
| + | |SPAII= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 5: | Line 14: | ||
|distance_to_tss=556 | |distance_to_tss=556 | ||
|end=79559318 | |end=79559318 | ||
| + | |end_of_center_position=80132518 | ||
|entrez_id=729238 | |entrez_id=729238 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=COLEC5 | + | |gene_alias=COLEC5 |
|gene_description=surfactant protein A2 | |gene_description=surfactant protein A2 | ||
|gene_name=SFTPA2 | |gene_name=SFTPA2 | ||
| Line 18: | Line 28: | ||
|species=human | |species=human | ||
|start=79559311 | |start=79559311 | ||
| + | |start_of_center_position=80132517 | ||
|strand=+ | |strand=+ | ||
|tata_box="-58(CTCCTGAAAAGG,-,0.00)" | |tata_box="-58(CTCCTGAAAAGG,-,0.00)" | ||
Revision as of 05:53, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80132517 |
|---|---|
| End of the center position in the TSS region: | 80132518 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 556 |
|---|---|
| Nearest PromoterID: | NM_001320814 |
| Entrez ID: | 729238 |
| Nearest Unigene: | Hs.523084 |
| Nearest Refseq: | NM_001098668 |
| Nearest Ensembl: | ENSG00000185303 |
| Gene Name: | SFTPA2 |
| Gene Alias: | COLEC5 |
| Gene Description: | surfactant protein A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-58(CTCCTGAAAAGG,-,0.00)" |
