Difference between revisions of "TSS:Hg 243612.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001280554:21 NM_001280553:21 NM_001280552:21 NM_001280551:21 NM_001280549:21 NM_001280548:21 NM_001280547:21 NM_001280555:21 NM_016734:21 NM_00128055...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BSAP= | ||
|all_trans=NM_001280554:21 NM_001280553:21 NM_001280552:21 NM_001280551:21 NM_001280549:21 NM_001280548:21 NM_001280547:21 NM_001280555:21 NM_016734:21 NM_001280556:21 NM_001280550:21 NR_103999:21 NR_104000:21 ENST00000358127.8:315 uc003zzo.3:315 M96944:394 ENST00000377853.6:459 ENST00000377840.6:459 ENST00000377852.6:459 ENST00000523241.5:459 ENST00000520154.5:459 uc064tbd.1:459 uc010mlo.3:459 uc010mlp.3:459 uc010mls.3:459 uc010mlr.3:459 AY463952:459 AY463953:459 AY463954:459 AY463955:459 AY463956:459 AY463957:459 ENST00000520281.5:469 ENST00000446742.5:469 ENST00000522003.5:469 ENST00000523145.5:469 ENST00000523493.5:469 ENST00000414447.5:469 ENST00000377847.6:469 uc011lpw.3:469 uc011lpz.3:469 uc011lpx.3:469 uc011lqc.3:469 uc011lqa.3:469 uc011lpy.3:469 uc064tbe.1:469 FJ626419:469 FJ626420:469 FJ626421:469 FJ626422:469 FJ626423:469 FJ626424:469 FJ626425:469 BC156189:469 BC156927:469 AB529192:469 | |all_trans=NM_001280554:21 NM_001280553:21 NM_001280552:21 NM_001280551:21 NM_001280549:21 NM_001280548:21 NM_001280547:21 NM_001280555:21 NM_016734:21 NM_001280556:21 NM_001280550:21 NR_103999:21 NR_104000:21 ENST00000358127.8:315 uc003zzo.3:315 M96944:394 ENST00000377853.6:459 ENST00000377840.6:459 ENST00000377852.6:459 ENST00000523241.5:459 ENST00000520154.5:459 uc064tbd.1:459 uc010mlo.3:459 uc010mlp.3:459 uc010mls.3:459 uc010mlr.3:459 AY463952:459 AY463953:459 AY463954:459 AY463955:459 AY463956:459 AY463957:459 ENST00000520281.5:469 ENST00000446742.5:469 ENST00000522003.5:469 ENST00000523145.5:469 ENST00000523493.5:469 ENST00000414447.5:469 ENST00000377847.6:469 uc011lpw.3:469 uc011lpz.3:469 uc011lpx.3:469 uc011lqc.3:469 uc011lqa.3:469 uc011lpy.3:469 uc064tbe.1:469 FJ626419:469 FJ626420:469 FJ626421:469 FJ626422:469 FJ626423:469 FJ626424:469 FJ626425:469 BC156189:469 BC156927:469 AB529192:469 | ||
|chr=chr9 | |chr=chr9 | ||
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|distance_to_tss=-21 | |distance_to_tss=-21 | ||
|end=37034500 | |end=37034500 | ||
| + | |end_of_center_position=9775 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=ALL3 | + | |gene_alias=ALL3 |
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
|gene_id=5079 | |gene_id=5079 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=37034499 | |start=37034499 | ||
| + | |start_of_center_position=9774 | ||
|strand=- | |strand=- | ||
|tata_box="-9(CCCTATAAAAGT,-,0.00)" | |tata_box="-9(CCCTATAAAAGT,-,0.00)" | ||
Revision as of 16:53, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9774 |
|---|---|
| End of the center position in the TSS region: | 9775 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280548 NM_001280547 NM_001280555 NM_016734 NM_001280556 NM_001280550 NR_103999 NR_104000 |
|---|---|
| Distance: | 21 |
| Num_trans: | 56 |
| All_trans: | NM_001280554:21 NM_001280553:21 NM_001280552:21 NM_001280551:21 NM_001280549:21 NM_001280548:21 NM_001280547:21 NM_001280555:21 NM_016734:21 NM_001280556:21 NM_001280550:21 NR_103999:21 NR_104000:21 ENST00000358127.8:315 uc003zzo.3:315 M96944:394 ENST00000377853.6:459 ENST00000377840.6:459 ENST00000377852.6:459 ENST00000523241.5:459 ENST00000520154.5:459 uc064tbd.1:459 uc010mlo.3:459 uc010mlp.3:459 uc010mls.3:459 uc010mlr.3:459 AY463952:459 AY463953:459 AY463954:459 AY463955:459 AY463956:459 AY463957:459 ENST00000520281.5:469 ENST00000446742.5:469 ENST00000522003.5:469 ENST00000523145.5:469 ENST00000523493.5:469 ENST00000414447.5:469 ENST00000377847.6:469 uc011lpw.3:469 uc011lpz.3:469 uc011lpx.3:469 uc011lqc.3:469 uc011lqa.3:469 uc011lpy.3:469 uc064tbe.1:469 FJ626419:469 FJ626420:469 FJ626421:469 FJ626422:469 FJ626423:469 FJ626424:469 FJ626425:469 BC156189:469 BC156927:469 AB529192:469 |
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NM_001280556 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-9(CCCTATAAAAGT,-,0.00)" |
