Difference between revisions of "TSS:Hg 243738.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST0000042...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HPE7= | ||
| + | |NBCCS= | ||
| + | |PTC= | ||
| + | |PTC1= | ||
| + | |PTCH= | ||
| + | |PTCH11= | ||
|all_trans=ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST00000429896.6:-228 NM_001083606:-228 uc010mrp.4:-228 U43148:-228 | |all_trans=ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST00000429896.6:-228 NM_001083606:-228 uc010mrp.4:-228 U43148:-228 | ||
|chr=chr9 | |chr=chr9 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=10 | |distance_to_tss=10 | ||
|end=95507189 | |end=95507189 | ||
| + | |end_of_center_position=12977062 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 24: | Line 31: | ||
|species=human | |species=human | ||
|start=95507188 | |start=95507188 | ||
| + | |start_of_center_position=12977061 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000418258.5 ENST00000553011.5 NM_001083607 uc010mro.4 uc064ums.1 AB189440 | |transcript_name=ENST00000418258.5 ENST00000553011.5 NM_001083607 uc010mro.4 uc064ums.1 AB189440 | ||
Revision as of 18:15, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 12977061 |
|---|---|
| End of the center position in the TSS region: | 12977062 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000418258.5 ENST00000553011.5 NM_001083607 uc010mro.4 uc064ums.1 AB189440 |
|---|---|
| Distance: | -10 |
| Num_trans: | 12 |
| All_trans: | ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST00000429896.6:-228 NM_001083606:-228 uc010mrp.4:-228 U43148:-228 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001083607 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
