Difference between revisions of "TSS:Hg 101404.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=69 |entrez_id=10558 |gc_percent=0.656716 |gene_alias=HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI |gene_description=serine palmitoyltransferas...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSN1= | ||
| + | |LBC1= | ||
| + | |LCB1= | ||
| + | |SPT1= | ||
| + | |SPTI= | ||
| + | |all_trans=AK098344:0 ENST00000482632.5:2 uc064ugl.1:2 ENST00000337841.4:3 uc004arn.3:3 BC007085:3 ENST00000488921.5:4 uc064ugn.1:4 BC068537:8 AK299153:8 ENST00000262554.6:10 uc004arl.3:10 AK291546:12 Y08685:16 KJ902128:16 CU686661:16 KJ898242:16 AB209757:30 ENST00000461132.1:48 uc064ugo.1:48 NM_001281303:-50 NM_006415:-50 NM_178324:-50 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=69 | |distance_to_tss=69 | ||
| + | |end=92115424 | ||
|entrez_id=10558 | |entrez_id=10558 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI | |gene_alias=HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI | ||
|gene_description=serine palmitoyltransferase long chain base subunit 1 | |gene_description=serine palmitoyltransferase long chain base subunit 1 | ||
| − | |gene_name=SPTLC1 | + | |gene_id=10558 |
| + | |gene_name=serine palmitoyltransferase long chain base subunit 1 | ||
| + | |gene_source=HGNC:11277 | ||
| + | |gene_symbol=SPTLC1 | ||
| + | |gene_synonyms=HSAN1 LCB1 SPTI hLCB1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11277 | ||
|nearest_ensembl=ENSG00000090054 | |nearest_ensembl=ENSG00000090054 | ||
|nearest_promoter_id=NM_178324 | |nearest_promoter_id=NM_178324 | ||
|nearest_refseq=NM_006415 | |nearest_refseq=NM_006415 | ||
|nearest_unigene=Hs.90458 | |nearest_unigene=Hs.90458 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=92115385 | ||
| + | |strand=- | ||
| + | |transcript_name=AK098344 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101404.1 | |tss_id=hg_101404.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:42, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK098344 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | AK098344:0 ENST00000482632.5:2 uc064ugl.1:2 ENST00000337841.4:3 uc004arn.3:3 BC007085:3 ENST00000488921.5:4 uc064ugn.1:4 BC068537:8 AK299153:8 ENST00000262554.6:10 uc004arl.3:10 AK291546:12 Y08685:16 KJ902128:16 CU686661:16 KJ898242:16 AB209757:30 ENST00000461132.1:48 uc064ugo.1:48 NM_001281303:-50 NM_006415:-50 NM_178324:-50 |
TATA-Box annotation
| Distance to TSS: | 69 |
|---|---|
| Nearest PromoterID: | NM_178324 |
| Entrez ID: | 10558 |
| Nearest Unigene: | Hs.90458 |
| Nearest Refseq: | NM_006415 |
| Nearest Ensembl: | ENSG00000090054 |
| Gene Name: | serine palmitoyltransferase long chain base subunit 1 |
| Gene Alias: | HSAN1 |
| Gene Description: | serine palmitoyltransferase long chain base subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
